FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5286, 232 aa
  1>>>pF1KE5286 232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6704+/-0.000665; mu= 12.1452+/- 0.040
 mean_var=69.4920+/-14.319, 0's: 0 Z-trim(110.9): 34  B-trim: 37 in 1/52
 Lambda= 0.153853
 statistics sampled from 11892 (11926) to 11892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.366), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS32545.1 KCTD11 gene_id:147040|Hs108|chr17      ( 232) 1592 361.8 2.1e-100
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11      ( 260)  529 125.9 2.5e-29


>>CCDS32545.1 KCTD11 gene_id:147040|Hs108|chr17           (232 aa)
 initn: 1592 init1: 1592 opt: 1592  Z-score: 1916.0  bits: 361.8 E(32554): 2.1e-100
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KE5 MLGAMFRAGTPMPPNLNSQGGGHYFIDRDGKAFRHILNFLRLGRLDLPRGYGETALLRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLGAMFRAGTPMPPNLNSQGGGHYFIDRDGKAFRHILNFLRLGRLDLPRGYGETALLRAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ADFYQIRPLLDALRELEASQGTPAPTAALLHADVDVSPRLVHFSARRGPHHYELSSVQVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ADFYQIRPLLDALRELEASQGTPAPTAALLHADVDVSPRLVHFSARRGPHHYELSSVQVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TFRANLFCTDSECLGALRARFGVASGDRAEGSPHFHLEWAPRPVELPEVEYGRLGLQPLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TFRANLFCTDSECLGALRARFGVASGDRAEGSPHFHLEWAPRPVELPEVEYGRLGLQPLW
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KE5 TGGPGERREVVGTPSFLEEVLRVALEHGFRLDSVFPDPEDLLNSRSLRFVRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TGGPGERREVVGTPSFLEEVLRVALEHGFRLDSVFPDPEDLLNSRSLRFVRH
              190       200       210       220       230  

>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11           (260 aa)
 initn: 457 init1: 246 opt: 529  Z-score: 640.0  bits: 125.9 E(32554): 2.5e-29
Smith-Waterman score: 529; 40.2% identity (68.6% similar) in 239 aa overlap (1-232:28-259)

                                          10        20        30   
pF1KE5                            MLGAMFRAGTPMPPNLNSQGGGHYFIDRDGKAF
                                  :::::: .:  :: . .::  :. :::::::.:
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF-SGK-MPTKRDSQ--GNCFIDRDGKVF
               10        20        30          40          50      

            40        50        60        70        80        90   
pF1KE5 RHILNFLRLGRLDLPRGYGETALLRAEADFYQIRPLLDALRELEASQGTPAPTAALLHAD
       :.:::::: ..::::. . : .::: ::::::..::..::.: :. . . :   :.:.  
CCDS31 RYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEV-ELSKAEKNAMLNIT
         60        70        80        90       100        110     

           100       110       120       130       140        150  
pF1KE5 VDVSPRLVHFSARRGPHHYELSSVQVDTFRANLFCTDSECLGALRAR-FGVASGDRAEGS
       ..   . :::..:..:. : ::: ....: ::.: :.   :  : .. :  ..:. .  .
CCDS31 LNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSIT
         120       130       140       150       160       170     

                  160       170       180       190       200      
pF1KE5 PHFH------LEWAPRPVELPEVEYGRLGLQPLWTGGPGERREVVGTPSFLEEVLRVALE
        :..      :.:.     ::: :: . .:. ::.  :... .. .   :.::::..:: 
CCDS31 SHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVV-PANK-QINSFQVFVEEVLKIALS
         180       190       200       210         220       230   

        210       220       230   
pF1KE5 HGFRLDSVFPDPEDLLNSRSLRFVRH 
        :: .::  :   :..:.. .:..:. 
CCDS31 DGFCIDSSHPHALDFMNNKIIRLIRYR
           240       250       260




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:25:51 2016 done: Mon Nov  7 23:25:51 2016
 Total Scan time:  2.060 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]