FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5283, 256 aa
  1>>>pF1KE5283 256 - 256 aa - 256 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1400+/-0.000281; mu= 16.1825+/- 0.018
 mean_var=74.7184+/-15.018, 0's: 0 Z-trim(118.7): 4  B-trim: 0 in 0/54
 Lambda= 0.148375
 statistics sampled from 32000 (32004) to 32000 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.375), width:  16
 Scan time:  5.930

The best scores are:                                      opt bits E(85289)
NP_003721 (OMIM: 612944,612951) ribonuclease T2 pr ( 256) 1847 404.1 1.3e-112
XP_016866886 (OMIM: 612944,612951) PREDICTED: ribo ( 218) 1579 346.6 2.2e-95
XP_016866887 (OMIM: 612944,612951) PREDICTED: ribo ( 164) 1153 255.3 4.9e-68
XP_016866888 (OMIM: 612944,612951) PREDICTED: ribo ( 162) 1104 244.8   7e-65


>>NP_003721 (OMIM: 612944,612951) ribonuclease T2 precur  (256 aa)
 initn: 1847 init1: 1847 opt: 1847  Z-score: 2142.7  bits: 404.1 E(85289): 1.3e-112
Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE5 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV
              190       200       210       220       230       240

              250      
pF1KE5 CEDGPVFYPPPKKTKH
       ::::::::::::::::
NP_003 CEDGPVFYPPPKKTKH
              250      

>>XP_016866886 (OMIM: 612944,612951) PREDICTED: ribonucl  (218 aa)
 initn: 1579 init1: 1579 opt: 1579  Z-score: 1833.6  bits: 346.6 E(85289): 2.2e-95
Smith-Waterman score: 1579; 100.0% identity (100.0% similar) in 218 aa overlap (39-256:1-218)

       10        20        30        40        50        60        
pF1KE5 ALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPDYWTIHGLW
                                     ::::::::::::::::::::::::::::::
XP_016                               MVQHWPETVCEKIQNDCRDPPDYWTIHGLW
                                             10        20        30

       70        80        90       100       110       120        
pF1KE5 PDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDAL
               40        50        60        70        80        90

      130       140       150       160       170       180        
pF1KE5 NSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPS
              100       110       120       130       140       150

      190       200       210       220       230       240        
pF1KE5 QDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCEDGPVFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCEDGPVFY
              160       170       180       190       200       210

      250      
pF1KE5 PPPKKTKH
       ::::::::
XP_016 PPPKKTKH
               

>>XP_016866887 (OMIM: 612944,612951) PREDICTED: ribonucl  (164 aa)
 initn: 1153 init1: 1153 opt: 1153  Z-score: 1342.5  bits: 255.3 E(85289): 4.9e-68
Smith-Waterman score: 1153; 100.0% identity (100.0% similar) in 164 aa overlap (93-256:1-164)

             70        80        90       100       110       120  
pF1KE5 TIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCA
                                     ::::::::::::::::::::::::::::::
XP_016                               MRAYWPDVIHSFPNRSRFWKHEWEKHGTCA
                                             10        20        30

            130       140       150       160       170       180  
pF1KE5 AQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKI
               40        50        60        70        80        90

            190       200       210       220       230       240  
pF1KE5 QCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCE
              100       110       120       130       140       150

            250      
pF1KE5 DGPVFYPPPKKTKH
       ::::::::::::::
XP_016 DGPVFYPPPKKTKH
              160    

>>XP_016866888 (OMIM: 612944,612951) PREDICTED: ribonucl  (162 aa)
 initn: 1100 init1: 1100 opt: 1104  Z-score: 1285.9  bits: 244.8 E(85289): 7e-65
Smith-Waterman score: 1104; 96.8% identity (98.7% similar) in 155 aa overlap (1-154:1-155)

               10        20        30        40        50        60
pF1KE5 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT
               70        80        90       100       110       120

              130       140       150        160       170         
pF1KE5 CAAQVDALNSQKKYFGRSLELYRELDLNSV-LLKLGIKPSINYYQVADFKDALARVYGVI
       :::::::::::::::::::::::::::: . .::.                         
XP_016 CAAQVDALNSQKKYFGRSLELYRELDLNRLQILKMPLPEYME                  
              130       140       150       160                    

     180       190       200       210       220       230         
pF1KE5 PKIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLR




256 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:24:19 2016 done: Mon Nov  7 23:24:20 2016
 Total Scan time:  5.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]