FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5282, 252 aa
  1>>>pF1KE5282 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8217+/-0.000799; mu= 12.4050+/- 0.048
 mean_var=70.6871+/-14.367, 0's: 0 Z-trim(107.7): 7  B-trim: 460 in 1/51
 Lambda= 0.152547
 statistics sampled from 9763 (9764) to 9763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.3), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS1885.1 PNO1 gene_id:56902|Hs108|chr2           ( 252) 1628 367.0 6.9e-102


>>CCDS1885.1 PNO1 gene_id:56902|Hs108|chr2                (252 aa)
 initn: 1628 init1: 1628 opt: 1628  Z-score: 1942.7  bits: 367.0 E(32554): 6.9e-102
Smith-Waterman score: 1628; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KE5 MESEMETQSARAEEGFTQVTRKGGRRAKKRQAEQLSAAGEGGDAGRMDTEEARPAKRPVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MESEMETQSARAEEGFTQVTRKGGRRAKKRQAEQLSAAGEGGDAGRMDTEEARPAKRPVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PPLCGDGLLSGKEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PPLCGDGLLSGKEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 CKETKDVSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 CKETKDVSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GRIAGKGGKTKFTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GRIAGKGGKTKFTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGN
              190       200       210       220       230       240

              250  
pF1KE5 IRAVASRSADRF
       ::::::::::::
CCDS18 IRAVASRSADRF
              250  




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:23:42 2016 done: Mon Nov  7 23:23:42 2016
 Total Scan time:  2.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]