FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5281, 251 aa
  1>>>pF1KE5281 251 - 251 aa - 251 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2283+/-0.000723; mu= 14.8825+/- 0.044
 mean_var=61.8305+/-12.422, 0's: 0 Z-trim(108.2): 19  B-trim: 0 in 0/50
 Lambda= 0.163107
 statistics sampled from 10014 (10029) to 10014 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.308), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS6793.1 HDHD3 gene_id:81932|Hs108|chr9          ( 251) 1724 413.9 5.4e-116


>>CCDS6793.1 HDHD3 gene_id:81932|Hs108|chr9               (251 aa)
 initn: 1724 init1: 1724 opt: 1724  Z-score: 2196.0  bits: 413.9 E(32554): 5.4e-116
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE5 MAHRLQIRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MAHRLQIRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 HMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPA
              190       200       210       220       230       240

              250 
pF1KE5 LDCLEGSTPGL
       :::::::::::
CCDS67 LDCLEGSTPGL
              250 




251 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:23:07 2016 done: Mon Nov  7 23:23:07 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]