Result of FASTA (omim) for
pFN21AE5277
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5277, 220 aa
1>>>pF1KE5277 220 - 220 aa - 220 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4827+/-0.0003; mu= 13.4976+/- 0.019
mean_var=72.2352+/-14.355, 0's: 0 Z-trim(117.9): 8 B-trim: 1117 in 1/57
Lambda= 0.150904
statistics sampled from 30240 (30248) to 30240 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.355), width: 16
Scan time: 5.690
The best scores are: opt bits E(85289)
XP_011514712 (OMIM: 611478) PREDICTED: 7SK snRNA m ( 220) 1491 333.1 2.2e-91
NP_001181921 (OMIM: 611478) 7SK snRNA methylphosph ( 220) 1491 333.1 2.2e-91
NP_001181919 (OMIM: 611478) 7SK snRNA methylphosph ( 220) 1491 333.1 2.2e-91
NP_001181920 (OMIM: 611478) 7SK snRNA methylphosph ( 220) 1491 333.1 2.2e-91
NP_062552 (OMIM: 611478) 7SK snRNA methylphosphate ( 689) 1491 333.4 5.6e-91
>>XP_011514712 (OMIM: 611478) PREDICTED: 7SK snRNA methy (220 aa)
initn: 1491 init1: 1491 opt: 1491 Z-score: 1761.7 bits: 333.1 E(85289): 2.2e-91
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
130 140 150 160 170 180
190 200 210 220
pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
::::::::::::::::::::::::::::::::::::::::
XP_011 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
190 200 210 220
>>NP_001181921 (OMIM: 611478) 7SK snRNA methylphosphate (220 aa)
initn: 1491 init1: 1491 opt: 1491 Z-score: 1761.7 bits: 333.1 E(85289): 2.2e-91
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
130 140 150 160 170 180
190 200 210 220
pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
::::::::::::::::::::::::::::::::::::::::
NP_001 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
190 200 210 220
>>NP_001181919 (OMIM: 611478) 7SK snRNA methylphosphate (220 aa)
initn: 1491 init1: 1491 opt: 1491 Z-score: 1761.7 bits: 333.1 E(85289): 2.2e-91
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
130 140 150 160 170 180
190 200 210 220
pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
::::::::::::::::::::::::::::::::::::::::
NP_001 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
190 200 210 220
>>NP_001181920 (OMIM: 611478) 7SK snRNA methylphosphate (220 aa)
initn: 1491 init1: 1491 opt: 1491 Z-score: 1761.7 bits: 333.1 E(85289): 2.2e-91
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
130 140 150 160 170 180
190 200 210 220
pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
::::::::::::::::::::::::::::::::::::::::
NP_001 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
190 200 210 220
>>NP_062552 (OMIM: 611478) 7SK snRNA methylphosphate cap (689 aa)
initn: 1491 init1: 1491 opt: 1491 Z-score: 1754.3 bits: 333.4 E(85289): 5.6e-91
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:470-689)
10 20 30
pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPP
::::::::::::::::::::::::::::::
NP_062 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPP
440 450 460 470 480 490
40 50 60 70 80 90
pF1KE5 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGN
500 510 520 530 540 550
100 110 120 130 140 150
pF1KE5 YVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 YVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP
560 570 580 590 600 610
160 170 180 190 200 210
pF1KE5 WSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 WSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVY
620 630 640 650 660 670
220
pF1KE5 LFHKARSPSH
::::::::::
NP_062 LFHKARSPSH
680
220 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:27:13 2016 done: Tue Nov 8 07:27:14 2016
Total Scan time: 5.690 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]