FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5277, 220 aa
  1>>>pF1KE5277 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4315+/-0.000701; mu= 13.7763+/- 0.042
 mean_var=73.8061+/-14.237, 0's: 0 Z-trim(110.8): 11  B-trim: 0 in 0/52
 Lambda= 0.149289
 statistics sampled from 11869 (11876) to 11869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS55136.1 MEPCE gene_id:56257|Hs108|chr7         ( 220) 1491 329.7 8.8e-91
CCDS5693.1 MEPCE gene_id:56257|Hs108|chr7          ( 689) 1491 330.0 2.2e-90


>>CCDS55136.1 MEPCE gene_id:56257|Hs108|chr7              (220 aa)
 initn: 1491 init1: 1491 opt: 1491  Z-score: 1743.3  bits: 329.7 E(32554): 8.8e-91
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS
              130       140       150       160       170       180

              190       200       210       220
pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
       ::::::::::::::::::::::::::::::::::::::::
CCDS55 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH
              190       200       210       220

>>CCDS5693.1 MEPCE gene_id:56257|Hs108|chr7               (689 aa)
 initn: 1491 init1: 1491 opt: 1491  Z-score: 1736.0  bits: 330.0 E(32554): 2.2e-90
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:470-689)

                                             10        20        30
pF1KE5                               MVGLDIDSRLIHSARQNIRHYLSEELRLPP
                                     ::::::::::::::::::::::::::::::
CCDS56 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPP
     440       450       460       470       480       490         

               40        50        60        70        80        90
pF1KE5 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGN
     500       510       520       530       540       550         

              100       110       120       130       140       150
pF1KE5 YVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP
     560       570       580       590       600       610         

              160       170       180       190       200       210
pF1KE5 WSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVY
     620       630       640       650       660       670         

              220
pF1KE5 LFHKARSPSH
       ::::::::::
CCDS56 LFHKARSPSH
     680         




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:27:12 2016 done: Tue Nov  8 07:27:13 2016
 Total Scan time:  2.010 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]