FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5272, 177 aa
  1>>>pF1KE5272 177 - 177 aa - 177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0121+/-0.000754; mu= 14.3564+/- 0.045
 mean_var=61.1366+/-12.160, 0's: 0 Z-trim(107.6): 10  B-trim: 0 in 0/50
 Lambda= 0.164030
 statistics sampled from 9673 (9677) to 9673 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.297), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS1305.2 TNFSF18 gene_id:8995|Hs108|chr1         ( 199) 1217 296.0 8.9e-81


>>CCDS1305.2 TNFSF18 gene_id:8995|Hs108|chr1              (199 aa)
 initn: 1217 init1: 1217 opt: 1217  Z-score: 1563.6  bits: 296.0 E(32554): 8.9e-81
Smith-Waterman score: 1217; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:23-199)

                                     10        20        30        
pF1KE5                       MCLSHLENMPLSHSRTQGAQRSSWKLWLFCSIVMLLFL
                             ::::::::::::::::::::::::::::::::::::::
CCDS13 MTLHPSPITCEFLFSTALISPKMCLSHLENMPLSHSRTQGAQRSSWKLWLFCSIVMLLFL
               10        20        30        40        50        60

       40        50        60        70        80        90        
pF1KE5 CSFSWLIFIFLQLETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CSFSWLIFIFLQLETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIY
               70        80        90       100       110       120

      100       110       120       130       140       150        
pF1KE5 GQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTYELHVGDTIDLIFNSEHQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTYELHVGDTIDLIFNSEHQV
              130       140       150       160       170       180

      160       170       
pF1KE5 LKNNTYWGIILLANPQFIS
       :::::::::::::::::::
CCDS13 LKNNTYWGIILLANPQFIS
              190         




177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:19:06 2016 done: Mon Nov  7 23:19:06 2016
 Total Scan time:  1.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]