FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5271, 218 aa
  1>>>pF1KE5271 218 - 218 aa - 218 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6199+/-0.000421; mu= 18.1532+/- 0.026
 mean_var=67.3980+/-13.981, 0's: 0 Z-trim(110.2): 18  B-trim: 35 in 1/53
 Lambda= 0.156225
 statistics sampled from 18523 (18526) to 18523 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.217), width:  16
 Scan time:  5.190

The best scores are:                                      opt bits E(85289)
NP_037366 (OMIM: 609596) eukaryotic translation in ( 218) 1450 335.7 3.6e-92
NP_001287921 (OMIM: 609596) eukaryotic translation ( 192)  928 218.0 8.6e-57
NP_001295322 (OMIM: 609596) eukaryotic translation ( 131)  889 209.0 2.9e-54


>>NP_037366 (OMIM: 609596) eukaryotic translation initia  (218 aa)
 initn: 1450 init1: 1450 opt: 1450  Z-score: 1775.7  bits: 335.7 E(85289): 3.6e-92
Smith-Waterman score: 1450; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KE5 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS
              130       140       150       160       170       180

              190       200       210        
pF1KE5 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
       ::::::::::::::::::::::::::::::::::::::
NP_037 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
              190       200       210        

>>NP_001287921 (OMIM: 609596) eukaryotic translation ini  (192 aa)
 initn: 1249 init1: 928 opt: 928  Z-score: 1140.6  bits: 218.0 E(85289): 8.6e-57
Smith-Waterman score: 1201; 87.6% identity (88.1% similar) in 218 aa overlap (1-218:1-192)

               10        20        30        40        50        60
pF1KE5 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS
       ::::::::::::::::::::.                          :::::::::::::
NP_001 LDENMDLLEGITGFEDSVRKY--------------------------SQLKVWMSKYGWS
              130       140                                 150    

              190       200       210        
pF1KE5 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
       ::::::::::::::::::::::::::::::::::::::
NP_001 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
          160       170       180       190  

>>NP_001295322 (OMIM: 609596) eukaryotic translation ini  (131 aa)
 initn: 889 init1: 889 opt: 889  Z-score: 1095.2  bits: 209.0 E(85289): 2.9e-54
Smith-Waterman score: 889; 100.0% identity (100.0% similar) in 131 aa overlap (88-218:1-131)

        60        70        80        90       100       110       
pF1KE5 PAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAF
                                     ::::::::::::::::::::::::::::::
NP_001                               MIDQAHQEERPIRQILYLGDLLETCHFQAF
                                             10        20        30

       120       130       140       150       160       170       
pF1KE5 WQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY
               40        50        60        70        80        90

       180       190       200       210        
pF1KE5 GWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
       :::::::::::::::::::::::::::::::::::::::::
NP_001 GWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
              100       110       120       130 




218 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:18:32 2016 done: Mon Nov  7 23:18:33 2016
 Total Scan time:  5.190 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]