FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5269, 198 aa
  1>>>pF1KE5269 198 - 198 aa - 198 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0668+/-0.000311; mu= 15.3971+/- 0.019
 mean_var=70.7554+/-14.274, 0's: 0 Z-trim(117.0): 3  B-trim: 809 in 1/53
 Lambda= 0.152474
 statistics sampled from 28595 (28596) to 28595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.335), width:  16
 Scan time:  5.180

The best scores are:                                      opt bits E(85289)
NP_002940 (OMIM: 602375) 39S ribosomal protein L12 ( 198) 1266 286.9 1.5e-77


>>NP_002940 (OMIM: 602375) 39S ribosomal protein L12, mi  (198 aa)
 initn: 1266 init1: 1266 opt: 1266  Z-score: 1513.4  bits: 286.9 E(85289): 1.5e-77
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KE5 MLPAAARPLWGPCLGLRAAAFRLARRQVPCVCAVRHMRSSGHQRCEALAGAPLDNAPKEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MLPAAARPLWGPCLGLRAAAFRLARRQVPCVCAVRHMRSSGHQRCEALAGAPLDNAPKEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAE
              130       140       150       160       170       180

              190        
pF1KE5 AEKIKAALEAVGGTVVLE
       ::::::::::::::::::
NP_002 AEKIKAALEAVGGTVVLE
              190        




198 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:18:00 2016 done: Mon Nov  7 23:18:01 2016
 Total Scan time:  5.180 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]