Result of FASTA (ccds) for
pFN21AE5268
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5268, 201 aa
1>>>pF1KE5268 201 - 201 aa - 201 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0390+/-0.000527; mu= 16.0944+/- 0.032
mean_var=72.0360+/-14.382, 0's: 0 Z-trim(115.0): 17 B-trim: 0 in 0/54
Lambda= 0.151112
statistics sampled from 15575 (15591) to 15575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.479), width: 16
Scan time: 2.250
The best scores are: opt bits E(32554)
CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 ( 201) 1417 316.8 5.7e-87
CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 ( 207) 1131 254.4 3.4e-68
CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 ( 193) 1128 253.8 5.1e-68
CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 ( 228) 480 112.5 2e-25
CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 ( 205) 435 102.7 1.6e-22
CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 ( 213) 396 94.2 6.1e-20
CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 ( 183) 377 90.0 9.5e-19
CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 ( 238) 333 80.5 9e-16
>>CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 (201 aa)
initn: 1417 init1: 1417 opt: 1417 Z-score: 1674.8 bits: 316.8 E(32554): 5.7e-87
Smith-Waterman score: 1417; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KE5 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDT
130 140 150 160 170 180
190 200
pF1KE5 PSPLCLLLLLLLLILRLLRIL
:::::::::::::::::::::
CCDS10 PSPLCLLLLLLLLILRLLRIL
190 200
>>CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 (207 aa)
initn: 1143 init1: 1123 opt: 1131 Z-score: 1337.7 bits: 254.4 E(32554): 3.4e-68
Smith-Waterman score: 1131; 94.2% identity (97.1% similar) in 171 aa overlap (1-171:1-169)
10 20 30 40 50 60
pF1KE5 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDT
::::::::::::::::::::::::::::::::::::... . : ::: .:
CCDS44 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRAR-VLPR-SPGGGGIPAACTGGA
130 140 150 160 170
190 200
pF1KE5 PSPLCLLLLLLLLILRLLRIL
CCDS44 NSDRQDGALMGEIRGSEVTLAGACPLITG
180 190 200
>>CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 (193 aa)
initn: 1140 init1: 1120 opt: 1128 Z-score: 1334.6 bits: 253.8 E(32554): 5.1e-68
Smith-Waterman score: 1128; 97.5% identity (98.2% similar) in 163 aa overlap (1-163:1-162)
10 20 30 40 50 60
pF1KE5 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDT
::::::::::::::::::::::::::::::::::::. : ::
CCDS41 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPS-HPKEPESSQDPLEEEGSLL
130 140 150 160 170
190 200
pF1KE5 PSPLCLLLLLLLLILRLLRIL
CCDS41 PALGVPIQTDKMEH
180 190
>>CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 (228 aa)
initn: 516 init1: 244 opt: 480 Z-score: 570.1 bits: 112.5 E(32554): 2e-25
Smith-Waterman score: 483; 39.4% identity (63.3% similar) in 226 aa overlap (1-200:4-228)
10 20 30 40 50
pF1KE5 MRLLPLLRTVLWA-AFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDI
...: :. ::: .: .: . . :..:::::::::. ::: ... .:::::.
CCDS40 MLHVEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 VCPHYEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---GHVQFSEKIQ
::::: : . : ..::::.. :: .:. . ...::: :. : : ..::::.:
CCDS40 FCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTS-KGFKRWECNRPHSPNGPLKFSEKFQ
70 80 90 100 110
120 130 140 150
pF1KE5 RFTPFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSV-----CCK------------E
:::::::::: ::. :.::: :... . ::.:.: : : : .
CCDS40 LFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCMKTIGVHDRVFDVND
120 130 140 150 160 170
160 170 180 190 200
pF1KE5 RKSESAHPVGSP-GESG--TSGWRGGDTPS-PLCLLLLLLLLILRLLRIL
. .: .:. . ::. . : ...:: : :: .::.:. :: .
CCDS40 KVENSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL
180 190 200 210 220
>>CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 (205 aa)
initn: 427 init1: 196 opt: 435 Z-score: 517.7 bits: 102.7 E(32554): 1.6e-22
Smith-Waterman score: 435; 43.6% identity (67.3% similar) in 156 aa overlap (11-162:4-158)
10 20 30 40 50 60
pF1KE5 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
::: .:: ... ::.:.::::::.. : .... ::::.::.:::
CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPH
10 20 30 40 50
70 80 90 100 110
pF1KE5 YEGPGPPEGP-ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFT
:: . .. : . ::.:. :. :: .. . :: :. : : ..:::.::::
CCDS10 YEDHSVADAAMEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 PFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWR
::.:: :: :..::::: : . .::::.:.: : .: .::
CCDS10 PFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRLAADDPE
120 130 140 150 160 170
180 190 200
pF1KE5 GGDTPSPLCLLLLLLLLILRLLRIL
CCDS10 VRVLHSIGHSAAPRLFPLAWTVLLLPLLLLQTP
180 190 200
>>CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 (213 aa)
initn: 440 init1: 172 opt: 396 Z-score: 471.5 bits: 94.2 E(32554): 6.1e-20
Smith-Waterman score: 445; 44.4% identity (65.2% similar) in 187 aa overlap (24-198:33-210)
10 20 30 40
pF1KE5 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDA------VVE
.: :..:::: ::::. : . .::
CCDS12 PAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTVE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE5 LGLNDYLDIVCPHYEGPGPP-EGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---
...:::::: :::: .: :: : : ..::::. :. ::. . :..::: :. :
CCDS12 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHR-QRGFKRWECNRPAAPG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE5 GHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSVC-CKERKSESA
: ..::::.: :::::::::: ::. :::::. :.. . ::::.: : .: :.
CCDS12 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
130 140 150 160 170 180
170 180 190 200
pF1KE5 HPVGSPGESGTSGWRGGDTPSPLCLLLLLLLLILRLLRIL
.:. . ..: .: :: : :.: . .: :
CCDS12 EPIFTSNNSCSSP--GG------CRLFLSTIPVLWTLLGS
190 200 210
>>CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 (183 aa)
initn: 377 init1: 196 opt: 377 Z-score: 450.0 bits: 90.0 E(32554): 9.5e-19
Smith-Waterman score: 377; 43.0% identity (66.9% similar) in 142 aa overlap (11-147:4-144)
10 20 30 40 50 60
pF1KE5 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
::: .:: ... ::.:.::::::.. : .... ::::.::.:::
CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPH
10 20 30 40 50
70 80 90 100 110
pF1KE5 YEGPGPPEGP-ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFT
:: . .. : . ::.:. :. :: .. . :: :. : : ..:::.::::
CCDS10 YEDHSVADAAMEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 PFSLGFEFLPGETYYYIS-VPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGW
::.:: :: :..::::: : ... : ::
CCDS10 PFTLGKEFKEGHSYYYISHSPQAHDNPQEKRLAADDPEVRVLHSIGHSAAPRLFPLAWTV
120 130 140 150 160 170
180 190 200
pF1KE5 RGGDTPSPLCLLLLLLLLILRLLRIL
CCDS10 LLLPLLLLQTP
180
>>CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 (238 aa)
initn: 467 init1: 218 opt: 333 Z-score: 396.6 bits: 80.5 E(32554): 9e-16
Smith-Waterman score: 474; 45.1% identity (67.6% similar) in 173 aa overlap (3-164:8-178)
10 20 30 40 50
pF1KE5 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLD
:: :: : .:.. :. . ::.::::::: .: : .:....:::::
CCDS10 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
10 20 30 40 50 60
60 70 80 90 100
pF1KE5 IVCPHYE--------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFG-H-
: ::::. :::: : : ..::::. ::..:.: ...::: :. : . :
CCDS10 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNA--SQGFKRWECNRPHAPHS
70 80 90 100 110
110 120 130 140 150 160
pF1KE5 -VQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPV
..::::.::.. ::::.:: :. :::::.:: . .:::..: ::: . . .::
CCDS10 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV
120 130 140 150 160 170
170 180 190 200
pF1KE5 GSPGESGTSGWRGGDTPSPLCLLLLLLLLILRLLRIL
CCDS10 PTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
180 190 200 210 220 230
201 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:17:30 2016 done: Mon Nov 7 23:17:31 2016
Total Scan time: 2.250 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]