Result of FASTA (omim) for
pFN21AE5263
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5263, 172 aa
1>>>pF1KE5263 172 - 172 aa - 172 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3935+/-0.000266; mu= 17.7405+/- 0.017
mean_var=53.9729+/-10.760, 0's: 0 Z-trim(119.2): 9 B-trim: 0 in 0/50
Lambda= 0.174577
statistics sampled from 32859 (32868) to 32859 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.385), width: 16
Scan time: 4.640
The best scores are: opt bits E(85289)
NP_060056 (OMIM: 613104) calcium channel flower ho ( 172) 1151 296.8 1.1e-80
NP_001229298 (OMIM: 613104) calcium channel flower ( 233) 977 253.1 2.3e-67
XP_011516487 (OMIM: 613104) PREDICTED: calcium cha ( 144) 861 223.7 9.7e-59
XP_011516488 (OMIM: 613104) PREDICTED: calcium cha ( 109) 701 183.3 1.1e-46
XP_011516483 (OMIM: 613104) PREDICTED: calcium cha ( 205) 687 180.0 2e-45
XP_011516484 (OMIM: 613104) PREDICTED: calcium cha ( 170) 527 139.6 2.3e-33
NP_001129247 (OMIM: 613104) calcium channel flower ( 130) 470 125.2 4e-29
NP_001229299 (OMIM: 613104) calcium channel flower ( 191) 467 124.6 9e-29
XP_011516486 (OMIM: 613104) PREDICTED: calcium cha ( 163) 215 61.0 1e-09
>>NP_060056 (OMIM: 613104) calcium channel flower homolo (172 aa)
initn: 1151 init1: 1151 opt: 1151 Z-score: 1569.2 bits: 296.8 E(85289): 1.1e-80
Smith-Waterman score: 1151; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KE5 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
130 140 150 160 170
>>NP_001229298 (OMIM: 613104) calcium channel flower hom (233 aa)
initn: 971 init1: 971 opt: 977 Z-score: 1330.6 bits: 253.1 E(85289): 2.3e-67
Smith-Waterman score: 977; 93.1% identity (96.2% similar) in 159 aa overlap (1-157:1-158)
10 20 30 40 50 60
pF1KE5 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 TLLGNAIAFATGVLYGLSALGKKG--DAISYARIQQQRQQADEEKLAETLEGEL
:::::::::::::::::::::::. .: :.: :. :.
NP_001 TLLGNAIAFATGVLYGLSALGKKAQTEAGSFA-AQHPREPGPFSEGTRQAFATPAVVSGE
130 140 150 160 170
NP_001 IRMPAGAMRSPMPGSSSRGSRRMRRSSRRPWRGSCEGLGAPPSLSPLLALCGSK
180 190 200 210 220 230
>>XP_011516487 (OMIM: 613104) PREDICTED: calcium channel (144 aa)
initn: 861 init1: 861 opt: 861 Z-score: 1175.5 bits: 223.7 E(85289): 9.7e-59
Smith-Waterman score: 861; 99.2% identity (100.0% similar) in 132 aa overlap (41-172:13-144)
20 30 40 50 60 70
pF1KE5 SASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAAGVWMIMNAFI
.:::::::::::::::::::::::::::::
XP_011 MLTAAGSTAELSACAISGLFNCITIHPLNIAAGVWMIMNAFI
10 20 30 40
80 90 100 110 120 130
pF1KE5 LLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFA
50 60 70 80 90 100
140 150 160 170
pF1KE5 TGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
::::::::::::::::::::::::::::::::::::::::::
XP_011 TGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
110 120 130 140
>>XP_011516488 (OMIM: 613104) PREDICTED: calcium channel (109 aa)
initn: 701 init1: 701 opt: 701 Z-score: 959.4 bits: 183.3 E(85289): 1.1e-46
Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 109 aa overlap (64-172:1-109)
40 50 60 70 80 90
pF1KE5 SGVLGAVSCAISGLFNCITIHPLNIAAGVWMIMNAFILLLCEAPFCCQFIEFANTVAEKV
::::::::::::::::::::::::::::::
XP_011 MIMNAFILLLCEAPFCCQFIEFANTVAEKV
10 20 30
100 110 120 130 140 150
pF1KE5 DRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKGDAISYARIQ
40 50 60 70 80 90
160 170
pF1KE5 QQRQQADEEKLAETLEGEL
:::::::::::::::::::
XP_011 QQRQQADEEKLAETLEGEL
100
>>XP_011516483 (OMIM: 613104) PREDICTED: calcium channel (205 aa)
initn: 681 init1: 681 opt: 687 Z-score: 936.6 bits: 180.0 E(85289): 2e-45
Smith-Waterman score: 687; 89.9% identity (95.0% similar) in 119 aa overlap (41-157:13-130)
20 30 40 50 60 70
pF1KE5 SASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAAGVWMIMNAFI
.:::::::::::::::::::::::::::::
XP_011 MLTAAGSTAELSACAISGLFNCITIHPLNIAAGVWMIMNAFI
10 20 30 40
80 90 100 110 120 130
pF1KE5 LLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFA
50 60 70 80 90 100
140 150 160 170
pF1KE5 TGVLYGLSALGKKG--DAISYARIQQQRQQADEEKLAETLEGEL
:::::::::::::. .: :.: :. :.
XP_011 TGVLYGLSALGKKAQTEAGSFA-AQHPREPGPFSEGTRQAFATPAVVSGEIRMPAGAMRS
110 120 130 140 150 160
>>XP_011516484 (OMIM: 613104) PREDICTED: calcium channel (170 aa)
initn: 521 init1: 521 opt: 527 Z-score: 719.9 bits: 139.6 E(85289): 2.3e-33
Smith-Waterman score: 527; 88.5% identity (93.8% similar) in 96 aa overlap (64-157:1-95)
40 50 60 70 80 90
pF1KE5 SGVLGAVSCAISGLFNCITIHPLNIAAGVWMIMNAFILLLCEAPFCCQFIEFANTVAEKV
::::::::::::::::::::::::::::::
XP_011 MIMNAFILLLCEAPFCCQFIEFANTVAEKV
10 20 30
100 110 120 130 140 150
pF1KE5 DRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKG--DAISYAR
::::::::::::::::::::::::::::::::::::::::::::::::::. .: :.:
XP_011 DRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFATGVLYGLSALGKKAQTEAGSFA-
40 50 60 70 80
160 170
pF1KE5 IQQQRQQADEEKLAETLEGEL
:. :.
XP_011 AQHPREPGPFSEGTRQAFATPAVVSGEIRMPAGAMRSPMPGSSSRGSRRMRRSSRRPWRG
90 100 110 120 130 140
>>NP_001129247 (OMIM: 613104) calcium channel flower hom (130 aa)
initn: 478 init1: 466 opt: 470 Z-score: 643.9 bits: 125.2 E(85289): 4e-29
Smith-Waterman score: 754; 75.0% identity (75.6% similar) in 172 aa overlap (1-172:1-130)
10 20 30 40 50 60
pF1KE5 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
::::.: ::::::::::::
NP_001 GVWMMM------------------------------------------AVVPIVISLTLT
70
130 140 150 160 170
pF1KE5 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
80 90 100 110 120 130
>>NP_001229299 (OMIM: 613104) calcium channel flower hom (191 aa)
initn: 466 init1: 466 opt: 467 Z-score: 637.5 bits: 124.6 E(85289): 9e-29
Smith-Waterman score: 580; 66.0% identity (69.8% similar) in 159 aa overlap (1-157:1-116)
10 20 30 40 50 60
pF1KE5 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
::::.: ::::::::::::
NP_001 GVWMMM------------------------------------------AVVPIVISLTLT
70
130 140 150 160 170
pF1KE5 TLLGNAIAFATGVLYGLSALGKKG--DAISYARIQQQRQQADEEKLAETLEGEL
:::::::::::::::::::::::. .: :.: :. :.
NP_001 TLLGNAIAFATGVLYGLSALGKKAQTEAGSFA-AQHPREPGPFSEGTRQAFATPAVVSGE
80 90 100 110 120 130
NP_001 IRMPAGAMRSPMPGSSSRGSRRMRRSSRRPWRGSCEGLGAPPSLSPLLALCGSK
140 150 160 170 180 190
>>XP_011516486 (OMIM: 613104) PREDICTED: calcium channel (163 aa)
initn: 209 init1: 209 opt: 215 Z-score: 295.5 bits: 61.0 E(85289): 1e-09
Smith-Waterman score: 290; 53.8% identity (59.7% similar) in 119 aa overlap (41-157:13-88)
20 30 40 50 60 70
pF1KE5 SASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAAGVWMIMNAFI
.:::::::::::::::::::::::.:
XP_011 MLTAAGSTAELSACAISGLFNCITIHPLNIAAGVWMMM----
10 20 30
80 90 100 110 120 130
pF1KE5 LLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLTTLLGNAIAFA
::::::::::::::::::::::
XP_011 --------------------------------------AVVPIVISLTLTTLLGNAIAFA
40 50 60
140 150 160 170
pF1KE5 TGVLYGLSALGKKG--DAISYARIQQQRQQADEEKLAETLEGEL
:::::::::::::. .: :.: :. :.
XP_011 TGVLYGLSALGKKAQTEAGSFA-AQHPREPGPFSEGTRQAFATPAVVSGEIRMPAGAMRS
70 80 90 100 110
172 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:25:36 2016 done: Tue Nov 8 07:25:37 2016
Total Scan time: 4.640 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]