Result of FASTA (ccds) for
pFN21AE5261
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5261, 186 aa
1>>>pF1KE5261 186 - 186 aa - 186 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8855+/-0.00091; mu= 15.0497+/- 0.054
mean_var=60.3305+/-12.170, 0's: 0 Z-trim(104.9): 74 B-trim: 0 in 0/50
Lambda= 0.165122
statistics sampled from 8081 (8157) to 8081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.251), width: 16
Scan time: 1.920
The best scores are: opt bits E(32554)
CCDS54604.1 SLC25A26 gene_id:115286|Hs108|chr3 ( 186) 1216 297.9 2.3e-81
CCDS2905.2 SLC25A26 gene_id:115286|Hs108|chr3 ( 274) 1216 298.0 3.2e-81
CCDS33327.1 SLC25A12 gene_id:8604|Hs108|chr2 ( 678) 258 70.1 3.3e-12
CCDS5645.1 SLC25A13 gene_id:10165|Hs108|chr7 ( 675) 244 66.7 3.3e-11
CCDS55130.1 SLC25A13 gene_id:10165|Hs108|chr7 ( 676) 244 66.7 3.4e-11
>>CCDS54604.1 SLC25A26 gene_id:115286|Hs108|chr3 (186 aa)
initn: 1216 init1: 1216 opt: 1216 Z-score: 1574.1 bits: 297.9 E(32554): 2.3e-81
Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KE5 MKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGLYRGYKSTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGLYRGYKSTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 LAKAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LAKAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLLLE
130 140 150 160 170 180
pF1KE5 VGRKSP
::::::
CCDS54 VGRKSP
>>CCDS2905.2 SLC25A26 gene_id:115286|Hs108|chr3 (274 aa)
initn: 1216 init1: 1216 opt: 1216 Z-score: 1571.7 bits: 298.0 E(32554): 3.2e-81
Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:89-274)
10 20 30
pF1KE5 MKHMLAASAGEVVACLIRVPSEVVKQRAQV
::::::::::::::::::::::::::::::
CCDS29 GSFPNAAAFFITYEYVKWFLHADSSSYLTPMKHMLAASAGEVVACLIRVPSEVVKQRAQV
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE5 SASTRTFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SASTRTFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVD
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE5 SWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGVWRSQGLAGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGVWRSQGLAGLF
180 190 200 210 220 230
160 170 180
pF1KE5 AGVFPRMAAISLGGFIFLGAYDRTHSLLLEVGRKSP
::::::::::::::::::::::::::::::::::::
CCDS29 AGVFPRMAAISLGGFIFLGAYDRTHSLLLEVGRKSP
240 250 260 270
>>CCDS33327.1 SLC25A12 gene_id:8604|Hs108|chr2 (678 aa)
initn: 233 init1: 135 opt: 258 Z-score: 332.6 bits: 70.1 E(32554): 3.3e-12
Smith-Waterman score: 258; 37.6% identity (65.2% similar) in 141 aa overlap (20-157:446-584)
10 20 30 40
pF1KE5 MKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFS--NILYEE
: :.:: : ::.. : : :.: .
CCDS33 KFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDL
420 430 440 450 460 470
50 60 70 80 90 100
pF1KE5 GIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAA
:: :::.: :. ::.:::: . ::.. : : . .. :: . . . ::.:: ::.
CCDS33 GIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHV-GGLNLLAAGAMAGVPAAS
480 490 500 510 520 530
110 120 130 140 150 160
pF1KE5 VTTPLDVAKTRITLA-KAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFI
..:: :: :::. .: .::..: .: :.. .. . : .: .... :. :.
CCDS33 LVTPADVIKTRLQVAARAGQTTYSG-VIDCFRKILREEGPSAFWKGTAARVFRSSPQFGV
540 550 560 570 580 590
170 180
pF1KE5 FLGAYDRTHSLLLEVGRKSP
CCDS33 TLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKF
600 610 620 630 640 650
>>CCDS5645.1 SLC25A13 gene_id:10165|Hs108|chr7 (675 aa)
initn: 208 init1: 111 opt: 244 Z-score: 314.6 bits: 66.7 E(32554): 3.3e-11
Smith-Waterman score: 244; 35.5% identity (64.5% similar) in 141 aa overlap (20-157:448-586)
10 20 30 40
pF1KE5 MKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFS--NILYEE
: :.:: : ::.. : : ... .
CCDS56 KFMHKDGSVPLAAEILAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALSVVRDL
420 430 440 450 460 470
50 60 70 80 90 100
pF1KE5 GIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAA
:. :.:.: :. ::.:::: . :: . .:: .. .: :. . . ::.:: ::.
CCDS56 GFFGIYKGAKACFLRDIPFSAIYFPCYAHVKASFA-NEDGQVSPGSLLLAGAIAGMPAAS
480 490 500 510 520 530
110 120 130 140 150 160
pF1KE5 VTTPLDVAKTRITLA-KAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFI
..:: :: :::. .: .::..: .: :.. .. . : .: .:. :. :.
CCDS56 LVTPADVIKTRLQVAARAGQTTYSG-VIDCFRKILREEGPKALWKGAGARVFRSSPQFGV
540 550 560 570 580 590
170 180
pF1KE5 FLGAYDRTHSLLLEVGRKSP
CCDS56 TLLTYELLQRWFYIDFGGVKPMGSEPVPKSRINLPAPNPDHVGGYKLAVATFAGIENKFG
600 610 620 630 640 650
>>CCDS55130.1 SLC25A13 gene_id:10165|Hs108|chr7 (676 aa)
initn: 208 init1: 111 opt: 244 Z-score: 314.6 bits: 66.7 E(32554): 3.4e-11
Smith-Waterman score: 244; 35.5% identity (64.5% similar) in 141 aa overlap (20-157:449-587)
10 20 30 40
pF1KE5 MKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFS--NILYEE
: :.:: : ::.. : : ... .
CCDS55 KFMHKDGSVPLAAEILAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALSVVRDL
420 430 440 450 460 470
50 60 70 80 90 100
pF1KE5 GIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAA
:. :.:.: :. ::.:::: . :: . .:: .. .: :. . . ::.:: ::.
CCDS55 GFFGIYKGAKACFLRDIPFSAIYFPCYAHVKASFA-NEDGQVSPGSLLLAGAIAGMPAAS
480 490 500 510 520 530
110 120 130 140 150 160
pF1KE5 VTTPLDVAKTRITLA-KAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFI
..:: :: :::. .: .::..: .: :.. .. . : .: .:. :. :.
CCDS55 LVTPADVIKTRLQVAARAGQTTYSG-VIDCFRKILREEGPKALWKGAGARVFRSSPQFGV
540 550 560 570 580 590
170 180
pF1KE5 FLGAYDRTHSLLLEVGRKSP
CCDS55 TLLTYELLQRWFYIDFGGVKPMGSEPVPKSRINLPAPNPDHVGGYKLAVATFAGIENKFG
600 610 620 630 640 650
186 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:58:37 2016 done: Mon Nov 7 22:58:37 2016
Total Scan time: 1.920 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]