FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5255, 173 aa
  1>>>pF1KE5255 173 - 173 aa - 173 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2903+/-0.000663; mu= 12.7287+/- 0.040
 mean_var=65.0688+/-12.761, 0's: 0 Z-trim(110.5): 4  B-trim: 0 in 0/50
 Lambda= 0.158997
 statistics sampled from 11684 (11686) to 11684 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.359), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS824.1 LAMTOR5 gene_id:10542|Hs108|chr1         ( 173) 1164 275.0 1.6e-74


>>CCDS824.1 LAMTOR5 gene_id:10542|Hs108|chr1              (173 aa)
 initn: 1164 init1: 1164 opt: 1164  Z-score: 1451.4  bits: 275.0 E(32554): 1.6e-74
Smith-Waterman score: 1164; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KE5 MEPGAGHLDGHRAGSPSLRQALCDGSAVMFSSKERGRCTVINFVPLEAPLRSTPRSRQVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MEPGAGHLDGHRAGSPSLRQALCDGSAVMFSSKERGRCTVINFVPLEAPLRSTPRSRQVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EACGGEGRAVPLGSEPEWSVGGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EACGGEGRAVPLGSEPEWSVGGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KE5 DEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS
              130       140       150       160       170   




173 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:24:24 2016 done: Tue Nov  8 07:24:25 2016
 Total Scan time:  1.930 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]