FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5253, 199 aa
  1>>>pF1KE5253 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1885+/-0.00105; mu= 10.3097+/- 0.064
 mean_var=92.7865+/-17.902, 0's: 0 Z-trim(105.1): 28  B-trim: 37 in 1/51
 Lambda= 0.133147
 statistics sampled from 8234 (8245) to 8234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS54180.1 CHMP1B gene_id:57132|Hs108|chr18       ( 199) 1228 245.7 1.4e-65
CCDS45552.1 CHMP1A gene_id:5119|Hs108|chr16        ( 196)  682 140.8 5.2e-34
CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19       ( 222)  296 66.7 1.2e-11


>>CCDS54180.1 CHMP1B gene_id:57132|Hs108|chr18            (199 aa)
 initn: 1228 init1: 1228 opt: 1228  Z-score: 1290.8  bits: 245.7 E(32554): 1.4e-65
Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE5 MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 QFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSV
              130       140       150       160       170       180

              190         
pF1KE5 ASAEQDELSQRLARLRDQV
       :::::::::::::::::::
CCDS54 ASAEQDELSQRLARLRDQV
              190         

>>CCDS45552.1 CHMP1A gene_id:5119|Hs108|chr16             (196 aa)
 initn: 723 init1: 609 opt: 682  Z-score: 724.1  bits: 140.8 E(32554): 5.2e-34
Smith-Waterman score: 682; 55.8% identity (85.3% similar) in 197 aa overlap (4-197:1-196)

               10        20        30        40        50        60
pF1KE5 MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKN
          :.  ::.:::.::.: . ::: .:. :::.::.:::. . :.: ::..::::::.::
CCDS45    MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKN
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KE5 QAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEH
       ..::.:::..::::::..:::::::  :::.:: :.:..: .:.::.:.:.:..::.::.
CCDS45 EGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQ
        60        70        80        90       100       110       

              130       140       150       160          170       
pF1KE5 QFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL---DLNMELPQGQTGSVG
       : ..:::.:. :::.:::.:::::::.::: :....:.: ::   :   .::.: . .::
CCDS45 QVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGAS-AVG
       120       130       140       150       160       170       

       180       190         
pF1KE5 TSVASAEQDELSQRLARLRDQV
        : . ...:.::.::: ::.  
CCDS45 ESSVRSQEDQLSRRLAALRN  
        180       190        

>>CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19            (222 aa)
 initn: 342 init1: 287 opt: 296  Z-score: 322.6  bits: 66.7 E(32554): 1.2e-11
Smith-Waterman score: 299; 30.7% identity (66.3% similar) in 199 aa overlap (11-196:22-220)

                          10        20        30        40         
pF1KE5            MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVAR
                            :. : .::.:  .: . .::   : :::  ..:.:...:
CCDS12 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KE5 IHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLE
       : :.. .: .  . .:. : : ..::. ..::  . ......: ::.:.: .  . ..: 
CCDS12 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KE5 KISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMEL-
       .:. .: .::.: : .:.. ..:.:.....      ... : ..... :: ::.:. :: 
CCDS12 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
              130       140       150       160       170       180

        170              180          190         
pF1KE5 --PQ-GQTGSVGT------SVASAEQD---ELSQRLARLRDQV
         :. : . ::..      ..:::  :   .: .::  ::   
CCDS12 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD 
              190       200       210       220   




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:54:11 2016 done: Mon Nov  7 22:54:11 2016
 Total Scan time:  1.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]