FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5252, 181 aa
  1>>>pF1KE5252 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3693+/-0.00077; mu= 12.2422+/- 0.046
 mean_var=56.9485+/-11.251, 0's: 0 Z-trim(107.1): 8  B-trim: 0 in 0/49
 Lambda= 0.169955
 statistics sampled from 9364 (9368) to 9364 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.288), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS14601.1 MCTS1 gene_id:28985|Hs108|chrX         ( 181) 1230 309.4 7.9e-85
CCDS48160.1 MCTS1 gene_id:28985|Hs108|chrX         ( 182) 1206 303.5 4.7e-83


>>CCDS14601.1 MCTS1 gene_id:28985|Hs108|chrX              (181 aa)
 initn: 1230 init1: 1230 opt: 1230  Z-score: 1636.4  bits: 309.4 E(32554): 7.9e-85
Smith-Waterman score: 1230; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE5 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 AKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTY
              130       140       150       160       170       180

        
pF1KE5 K
       :
CCDS14 K
        

>>CCDS48160.1 MCTS1 gene_id:28985|Hs108|chrX              (182 aa)
 initn: 1206 init1: 1206 opt: 1206  Z-score: 1604.6  bits: 303.5 E(32554): 4.7e-83
Smith-Waterman score: 1206; 99.4% identity (100.0% similar) in 178 aa overlap (4-181:5-182)

                10        20        30        40        50         
pF1KE5  MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI
           .:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MGKGRFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHI
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE5 EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE5 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GAKLYPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKT
              130       140       150       160       170       180

     180 
pF1KE5 YK
       ::
CCDS48 YK
         




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:53:39 2016 done: Mon Nov  7 22:53:39 2016
 Total Scan time:  1.590 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]