FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5249, 182 aa
  1>>>pF1KE5249 182 - 182 aa - 182 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.1646+/-0.000874; mu= 19.5081+/- 0.053
 mean_var=66.6949+/-14.202, 0's: 0 Z-trim(106.6): 25  B-trim: 165 in 1/48
 Lambda= 0.157046
 statistics sampled from 9034 (9056) to 9034 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.278), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS10777.1 PLLP gene_id:51090|Hs108|chr16         ( 182) 1190 278.0 2.2e-75
CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3         ( 173)  419 103.3 8.4e-23


>>CCDS10777.1 PLLP gene_id:51090|Hs108|chr16              (182 aa)
 initn: 1190 init1: 1190 opt: 1190  Z-score: 1466.7  bits: 278.0 E(32554): 2.2e-75
Smith-Waterman score: 1190; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE5 MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIADTPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIADTPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYITAFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYITAFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQMAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQMAGG
              130       140       150       160       170       180

         
pF1KE5 YA
       ::
CCDS10 YA
         

>>CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3              (173 aa)
 initn: 270 init1: 270 opt: 419  Z-score: 522.9  bits: 103.3 E(32554): 8.4e-23
Smith-Waterman score: 419; 42.8% identity (71.7% similar) in 159 aa overlap (8-166:12-168)

                   10        20        30        40        50      
pF1KE5     MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIA
                  :.: .:: :..  .: :..  :  :.:.  : :.. ..:::::::.:::
CCDS26 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLPGFLIVAEIVLGLLVWTLIA
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE5 DTPYHLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYI
        : :   ::.::::::::: :..:. .. .:. . . .. .:::  : . :: :: :::.
CCDS26 GTEYFRVPAFGWVMFVAVFYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE5 TAFIACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQ
       .: .. ...:  .  : .. .:. ::.:::: :: : :. ...::. :::          
CCDS26 SAAVVDASSV--SPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ     
              130         140       150       160       170        

        180  
pF1KE5 MAGGYA




182 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:52:23 2016 done: Mon Nov  7 22:52:23 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]