FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5248, 204 aa
  1>>>pF1KE5248 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6330+/-0.000977; mu= 8.7396+/- 0.059
 mean_var=123.5380+/-24.599, 0's: 0 Z-trim(108.7): 17  B-trim: 62 in 1/50
 Lambda= 0.115392
 statistics sampled from 10358 (10363) to 10358 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.318), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS2900.1 THOC7 gene_id:80145|Hs108|chr3          ( 204) 1326 231.2 3.3e-61
CCDS74957.1 THOC7 gene_id:80145|Hs108|chr3         ( 152)  975 172.7   1e-43


>>CCDS2900.1 THOC7 gene_id:80145|Hs108|chr3               (204 aa)
 initn: 1326 init1: 1326 opt: 1326  Z-score: 1212.3  bits: 231.2 E(32554): 3.3e-61
Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE5 MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 EFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQT
              130       140       150       160       170       180

              190       200    
pF1KE5 LENDEKLSEVEEAQEASMETDPKP
       ::::::::::::::::::::::::
CCDS29 LENDEKLSEVEEAQEASMETDPKP
              190       200    

>>CCDS74957.1 THOC7 gene_id:80145|Hs108|chr3              (152 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 898.3  bits: 172.7 E(32554): 1e-43
Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152)

             30        40        50        60        70        80  
pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE
                                     ::::::::::::::::::::::::::::::
CCDS74                               MLSTLSQCEFSMGKTLLVYDMNLREMENYE
                                             10        20        30

             90       100       110       120       130       140  
pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
               40        50        60        70        80        90

            150       160       170       180       190       200  
pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
              100       110       120       130       140       150

         
pF1KE5 KP
       ::
CCDS74 KP
         




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:51:50 2016 done: Mon Nov  7 22:51:50 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]