Result of FASTA (omim) for
pFN21AE5243
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5243, 204 aa
1>>>pF1KE5243 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5783+/-0.000376; mu= 12.3648+/- 0.023
mean_var=76.5504+/-15.468, 0's: 0 Z-trim(114.7): 14 B-trim: 580 in 1/52
Lambda= 0.146589
statistics sampled from 24644 (24656) to 24644 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.289), width: 16
Scan time: 4.270
The best scores are: opt bits E(85289)
NP_001026886 (OMIM: 612103) SOSS complex subunit B ( 204) 1378 300.5 1.2e-81
NP_001241665 (OMIM: 612103) SOSS complex subunit B ( 124) 856 190.0 1.4e-48
XP_005269205 (OMIM: 612104) PREDICTED: SOSS comple ( 211) 718 160.9 1.3e-39
NP_076973 (OMIM: 612104) SOSS complex subunit B1 [ ( 211) 718 160.9 1.3e-39
XP_005269206 (OMIM: 612104) PREDICTED: SOSS comple ( 211) 718 160.9 1.3e-39
XP_005269204 (OMIM: 612104) PREDICTED: SOSS comple ( 227) 718 161.0 1.4e-39
XP_005269203 (OMIM: 612104) PREDICTED: SOSS comple ( 254) 718 161.0 1.5e-39
XP_016860211 (OMIM: 612103) PREDICTED: SOSS comple ( 134) 671 150.9 8.9e-37
>>NP_001026886 (OMIM: 612103) SOSS complex subunit B2 is (204 aa)
initn: 1378 init1: 1378 opt: 1378 Z-score: 1586.6 bits: 300.5 E(85289): 1.2e-81
Smith-Waterman score: 1378; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ
130 140 150 160 170 180
190 200
pF1KE5 GTASNQTVMTTISNGRDPRRAFNR
::::::::::::::::::::::.:
NP_001 GTASNQTVMTTISNGRDPRRAFKR
190 200
>>NP_001241665 (OMIM: 612103) SOSS complex subunit B2 is (124 aa)
initn: 869 init1: 856 opt: 856 Z-score: 993.2 bits: 190.0 E(85289): 1.4e-48
Smith-Waterman score: 856; 99.2% identity (100.0% similar) in 124 aa overlap (81-204:1-124)
60 70 80 90 100 110
pF1KE5 TGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVP
::::::::::::::::::::::::::::::
NP_001 MWKGCLTLYTGRGGELQKIGEFCMVYSEVP
10 20 30
120 130 140 150 160 170
pF1KE5 NFSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSN
40 50 60 70 80 90
180 190 200
pF1KE5 GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR
::::::::::::::::::::::::::::::::.:
NP_001 GRGLINPQLQGTASNQTVMTTISNGRDPRRAFKR
100 110 120
>>XP_005269205 (OMIM: 612104) PREDICTED: SOSS complex su (211 aa)
initn: 773 init1: 700 opt: 718 Z-score: 832.1 bits: 160.9 E(85289): 1.3e-39
Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:6-211)
10 20 30 40 50 60
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
:..::::::::::..::::: :::::::::::::.::::::::::.:::::
XP_005 MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWD
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
..:.:::::::::::.::::..::::::::::::.::::::::::::::::::::::.:
XP_005 DVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYS
60 70 80 90 100 110
130 140 150 160
pF1KE5 GQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP-----ESREHQFSHAGR
:: ::..:.... .. . . : .. .:. :::. . : : ::
XP_005 TQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPS
120 130 140 150 160 170
170 180 190 200
pF1KE5 SN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR
. :. : : . .. . .:::.. ::. .:
XP_005 TRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR
180 190 200 210
>>NP_076973 (OMIM: 612104) SOSS complex subunit B1 [Homo (211 aa)
initn: 773 init1: 700 opt: 718 Z-score: 832.1 bits: 160.9 E(85289): 1.3e-39
Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:6-211)
10 20 30 40 50 60
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
:..::::::::::..::::: :::::::::::::.::::::::::.:::::
NP_076 MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWD
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
..:.:::::::::::.::::..::::::::::::.::::::::::::::::::::::.:
NP_076 DVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYS
60 70 80 90 100 110
130 140 150 160
pF1KE5 GQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP-----ESREHQFSHAGR
:: ::..:.... .. . . : .. .:. :::. . : : ::
NP_076 TQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPS
120 130 140 150 160 170
170 180 190 200
pF1KE5 SN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR
. :. : : . .. . .:::.. ::. .:
NP_076 TRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR
180 190 200 210
>>XP_005269206 (OMIM: 612104) PREDICTED: SOSS complex su (211 aa)
initn: 773 init1: 700 opt: 718 Z-score: 832.1 bits: 160.9 E(85289): 1.3e-39
Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:6-211)
10 20 30 40 50 60
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
:..::::::::::..::::: :::::::::::::.::::::::::.:::::
XP_005 MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWD
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
..:.:::::::::::.::::..::::::::::::.::::::::::::::::::::::.:
XP_005 DVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYS
60 70 80 90 100 110
130 140 150 160
pF1KE5 GQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP-----ESREHQFSHAGR
:: ::..:.... .. . . : .. .:. :::. . : : ::
XP_005 TQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPS
120 130 140 150 160 170
170 180 190 200
pF1KE5 SN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR
. :. : : . .. . .:::.. ::. .:
XP_005 TRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR
180 190 200 210
>>XP_005269204 (OMIM: 612104) PREDICTED: SOSS complex su (227 aa)
initn: 773 init1: 700 opt: 718 Z-score: 831.6 bits: 161.0 E(85289): 1.4e-39
Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:22-227)
10 20 30 40
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVA
:..::::::::::..::::: :::::::::::::.::::
XP_005 MRVPEDLAMGCRGSGSMTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE5 DKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSE
::::::.:::::..:.:::::::::::.::::..::::::::::::.:::::::::::::
XP_005 DKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSE
70 80 90 100 110 120
110 120 130 140 150
pF1KE5 VPNFSEPNPDYRGQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP-----
:::::::::.: :: ::..:.... .. . . : .. .:. :::. . :
XP_005 VPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGG
130 140 150 160 170 180
160 170 180 190 200
pF1KE5 ESREHQFSHAGRSN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR
: :: . :. : : . .. . .:::.. ::. .:
XP_005 PHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR
190 200 210 220
>>XP_005269203 (OMIM: 612104) PREDICTED: SOSS complex su (254 aa)
initn: 773 init1: 700 opt: 718 Z-score: 830.9 bits: 161.0 E(85289): 1.5e-39
Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:49-254)
10 20 30
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDG
:..::::::::::..::::: :::::::::
XP_005 APPAGCSAACTVLPAGLVGCRGSGSMTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDG
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE5 HEVRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKI
::::.::::::::::.:::::..:.:::::::::::.::::..::::::::::::.::::
XP_005 HEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKI
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE5 GEFCMVYSEVPNFSEPNPDYRGQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGV
::::::::::::::::::.: :: ::..:.... .. . . : .. .:. :::.
XP_005 GEFCMVYSEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGL
140 150 160 170 180 190
160 170 180 190 200
pF1KE5 HTGP-----ESREHQFSHAGRSN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR
. : : :: . :. : : . .. . .:::.. ::. .:
XP_005 SAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR
200 210 220 230 240 250
>>XP_016860211 (OMIM: 612103) PREDICTED: SOSS complex su (134 aa)
initn: 671 init1: 671 opt: 671 Z-score: 781.2 bits: 150.9 E(85289): 8.9e-37
Smith-Waterman score: 671; 96.2% identity (98.1% similar) in 105 aa overlap (1-105:1-105)
10 20 30 40 50 60
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
::::::::::::::::::::::::::::::::::::::::.. :
XP_016 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGDLGAVQAAAMRDSIHYYPGN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ
XP_016 DLHPDLEEPSSLGV
130
204 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:23:16 2016 done: Tue Nov 8 07:23:17 2016
Total Scan time: 4.270 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]