FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5243, 204 aa
  1>>>pF1KE5243 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5338+/-0.000859; mu= 12.5460+/- 0.052
 mean_var=69.7793+/-13.491, 0's: 0 Z-trim(107.4): 18  B-trim: 2 in 1/50
 Lambda= 0.153536
 statistics sampled from 9561 (9569) to 9561 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.294), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS33352.1 NABP1 gene_id:64859|Hs108|chr2         ( 204) 1378 313.9 4.4e-86
CCDS58745.1 NABP1 gene_id:64859|Hs108|chr2         ( 124)  856 198.1 1.9e-51
CCDS8911.1 NABP2 gene_id:79035|Hs108|chr12         ( 211)  718 167.7 4.6e-42


>>CCDS33352.1 NABP1 gene_id:64859|Hs108|chr2              (204 aa)
 initn: 1378 init1: 1378 opt: 1378  Z-score: 1658.9  bits: 313.9 E(32554): 4.4e-86
Smith-Waterman score: 1378; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ
              130       140       150       160       170       180

              190       200    
pF1KE5 GTASNQTVMTTISNGRDPRRAFNR
       ::::::::::::::::::::::.:
CCDS33 GTASNQTVMTTISNGRDPRRAFKR
              190       200    

>>CCDS58745.1 NABP1 gene_id:64859|Hs108|chr2              (124 aa)
 initn: 869 init1: 856 opt: 856  Z-score: 1037.3  bits: 198.1 E(32554): 1.9e-51
Smith-Waterman score: 856; 99.2% identity (100.0% similar) in 124 aa overlap (81-204:1-124)

               60        70        80        90       100       110
pF1KE5 TGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVP
                                     ::::::::::::::::::::::::::::::
CCDS58                               MWKGCLTLYTGRGGELQKIGEFCMVYSEVP
                                             10        20        30

              120       130       140       150       160       170
pF1KE5 NFSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NFSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSN
               40        50        60        70        80        90

              180       190       200    
pF1KE5 GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR
       ::::::::::::::::::::::::::::::::.:
CCDS58 GRGLINPQLQGTASNQTVMTTISNGRDPRRAFKR
              100       110       120    

>>CCDS8911.1 NABP2 gene_id:79035|Hs108|chr12              (211 aa)
 initn: 773 init1: 700 opt: 718  Z-score: 868.6  bits: 167.7 E(32554): 4.6e-42
Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:6-211)

               10        20        30        40        50        60
pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD
                :..::::::::::..::::: :::::::::::::.::::::::::.:::::
CCDS89     MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWD
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR
       ..:.:::::::::::.::::..::::::::::::.::::::::::::::::::::::.: 
CCDS89 DVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYS
         60        70        80        90       100       110      

                130       140            150            160        
pF1KE5 GQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP-----ESREHQFSHAGR
        ::  ::..:.... .. . . : .. .:.     :::. . :         :  ::   
CCDS89 TQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPS
        120       130       140       150       160       170      

      170        180       190       200    
pF1KE5 SN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR
       .   :.  :    :  . ..  . .:::.. ::. .:
CCDS89 TRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR
        180       190         200       210 




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:23:16 2016 done: Tue Nov  8 07:23:16 2016
 Total Scan time:  1.870 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]