FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5241, 250 aa
  1>>>pF1KE5241 250 - 250 aa - 250 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2309+/-0.000433; mu= 10.3251+/- 0.027
 mean_var=82.6630+/-16.317, 0's: 0 Z-trim(111.6): 19  B-trim: 1000 in 1/50
 Lambda= 0.141065
 statistics sampled from 20289 (20294) to 20289 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.238), width:  16
 Scan time:  5.130

The best scores are:                                      opt bits E(85289)
NP_057122 (OMIM: 260400,607444,609135) ribosome ma ( 250) 1603 336.0 3.9e-92


>>NP_057122 (OMIM: 260400,607444,609135) ribosome matura  (250 aa)
 initn: 1603 init1: 1603 opt: 1603  Z-score: 1775.1  bits: 336.0 E(85289): 3.9e-92
Smith-Waterman score: 1603; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KE5 MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK
              190       200       210       220       230       240

              250
pF1KE5 DVEEGDEKFE
       ::::::::::
NP_057 DVEEGDEKFE
              250




250 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:38:15 2016 done: Tue Nov  8 07:38:16 2016
 Total Scan time:  5.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]