FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5239, 256 aa
  1>>>pF1KE5239 256 - 256 aa - 256 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4360+/-0.000311; mu= 14.9917+/- 0.019
 mean_var=80.0556+/-16.480, 0's: 0 Z-trim(117.1): 7  B-trim: 0 in 0/53
 Lambda= 0.143344
 statistics sampled from 28774 (28778) to 28774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.337), width:  16
 Scan time:  7.400

The best scores are:                                      opt bits E(85289)
NP_057667 (OMIM: 607412) BPI fold-containing famil ( 256) 1642 348.6 6.3e-96
NP_001230122 (OMIM: 607412) BPI fold-containing fa ( 256) 1642 348.6 6.3e-96
NP_570913 (OMIM: 607412) BPI fold-containing famil ( 256) 1642 348.6 6.3e-96
NP_872325 (OMIM: 615718) BPI fold-containing famil ( 614)  208 52.4 2.3e-06


>>NP_057667 (OMIM: 607412) BPI fold-containing family A   (256 aa)
 initn: 1642 init1: 1642 opt: 1642  Z-score: 1843.2  bits: 348.6 E(85289): 6.3e-96
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
              190       200       210       220       230       240

              250      
pF1KE5 DIVNMLIHGLQFVIKV
       ::::::::::::::::
NP_057 DIVNMLIHGLQFVIKV
              250      

>>NP_001230122 (OMIM: 607412) BPI fold-containing family  (256 aa)
 initn: 1642 init1: 1642 opt: 1642  Z-score: 1843.2  bits: 348.6 E(85289): 6.3e-96
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
              190       200       210       220       230       240

              250      
pF1KE5 DIVNMLIHGLQFVIKV
       ::::::::::::::::
NP_001 DIVNMLIHGLQFVIKV
              250      

>>NP_570913 (OMIM: 607412) BPI fold-containing family A   (256 aa)
 initn: 1642 init1: 1642 opt: 1642  Z-score: 1843.2  bits: 348.6 E(85289): 6.3e-96
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
              190       200       210       220       230       240

              250      
pF1KE5 DIVNMLIHGLQFVIKV
       ::::::::::::::::
NP_570 DIVNMLIHGLQFVIKV
              250      

>>NP_872325 (OMIM: 615718) BPI fold-containing family B   (614 aa)
 initn: 163 init1:  93 opt: 208  Z-score: 235.2  bits: 52.4 E(85289): 2.3e-06
Smith-Waterman score: 217; 29.3% identity (59.0% similar) in 229 aa overlap (33-249:154-359)

             10        20        30        40           50         
pF1KE5 QTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALP---LSPTGLAGSLTNALSNGL
                                     : .. :..    ..: :: :.     ..:.
NP_872 RSAENAYGGHRGLGRYRAAPVGRLHRRELQPGEIPPGVATGAVGPGGLLGTGGMLAADGI
           130       140       150       160       170       180   

      60          70        80        90         100       110     
pF1KE5 LSG--GLLGILENLPLLDILKPGGGTSGGLLGGLLGK--VTSVIPGLNNIIDIKVTDPQL
       :.:  ::::         .:  ::  .:: . :.::.  . :.. :....  ...: :..
NP_872 LAGQGGLLG------GGGLLGDGGLLGGGGVLGVLGEGGILSTVQGITGLRIVELTLPRV
           190             200       210       220       230       

         120       130       140        150       160       170    
pF1KE5 LELGLVQSPDGHRLYVTIPLGIKLQVN-TPLVGASLLRLAVKLDITAEILAVRDKQERIH
            :.   :  .:..  :  .. .:   :.:  .: .::...:::..  . :.    .
NP_872 ----SVRLLPGVGVYLS--LYTRVAINGKSLIG--FLDIAVEVNITAKVRLTMDRTGYPR
           240       250         260         270       280         

          180       190       200        210       220       230   
pF1KE5 LVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTG-ILNKVLPELVQGNVCPLVNEVLRG
       ::.  :    :.....:: :: :    .:.:.:.. .:  :::.:.    ::.:. :: :
NP_872 LVIERCDTLLGGIKVKLLRGLLP----NLVDNLVNRVLADVLPDLL----CPIVDVVL-G
     290       300       310           320       330            340

              240       250                                        
pF1KE5 L---DITLVHDIVNMLIHGLQFVIKV                                  
       :   .. :: ... . : :                                         
NP_872 LVNDQLGLVDSLIPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGGLIDYPLGWPA
              350       360       370       380       390       400




256 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:48:03 2016 done: Mon Nov  7 22:48:04 2016
 Total Scan time:  7.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]