FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5239, 256 aa
  1>>>pF1KE5239 256 - 256 aa - 256 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7394+/-0.000706; mu= 13.0270+/- 0.042
 mean_var=74.4062+/-15.375, 0's: 0 Z-trim(110.1): 14  B-trim: 0 in 0/51
 Lambda= 0.148686
 statistics sampled from 11346 (11352) to 11346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.349), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS13217.1 BPIFA1 gene_id:51297|Hs108|chr20       ( 256) 1642 361.0 4.7e-100
CCDS13214.1 BPIFA2 gene_id:140683|Hs108|chr20      ( 249)  260 64.5   8e-11


>>CCDS13217.1 BPIFA1 gene_id:51297|Hs108|chr20            (256 aa)
 initn: 1642 init1: 1642 opt: 1642  Z-score: 1909.8  bits: 361.0 E(32554): 4.7e-100
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
              190       200       210       220       230       240

              250      
pF1KE5 DIVNMLIHGLQFVIKV
       ::::::::::::::::
CCDS13 DIVNMLIHGLQFVIKV
              250      

>>CCDS13214.1 BPIFA2 gene_id:140683|Hs108|chr20           (249 aa)
 initn: 143 init1:  72 opt: 260  Z-score: 307.8  bits: 64.5 E(32554): 8e-11
Smith-Waterman score: 260; 24.4% identity (61.4% similar) in 254 aa overlap (1-252:1-245)

               10        20        30        40        50        60
pF1KE5 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
       :.:   :... :.:. :  .   :   : . :   :.   :.   ::  .. :.:.. : 
CCDS13 MLQLWKLVLLCGVLTGTSES---LLDNLGNDLSNVVDKLEPVLHEGLE-TVDNTLKGILE
               10        20           30        40         50      

                70        80        90       100       110         
pF1KE5 SGGL-LGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELG
       .  . ::.:..    .. :  .  .  ::.....:.   .:  ..:. .:...  .:.. 
CCDS13 KLKVDLGVLQKSSAWQLAKQKAQEAEKLLNNVISKL---LPTNTDIFGLKISNSLILDVK
         60        70        80        90          100       110   

     120       130       140       150       160       170         
pF1KE5 LVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHL-VLG
            ::. : ...:.  .. :  :..: ... : ..::. . .    : : .  . :::
CCDS13 AEPIDDGKGLNLSFPVTANVTVAGPIIG-QIINLKASLDLLTAVTIETDPQTHQPVAVLG
           120       130       140        150       160       170  

      180       190       200       210       220       230        
pF1KE5 DCTHSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITL
       .:. .: :...::::  . . :. ...:. . :....  :.: ..:::.   ...::...
CCDS13 ECASDPTSISLSLLDKHSQI-INKFVNSVINTLKSTVSSLLQKEICPLIRIFIHSLDVNV
            180       190        200       210       220       230 

      240       250      
pF1KE5 VHDIVNMLIHGLQFVIKV
       ....:.   :  :.    
CCDS13 IQQVVDNPQHKTQLQTLI
             240         




256 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:48:02 2016 done: Mon Nov  7 22:48:02 2016
 Total Scan time:  2.040 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]