FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5238, 259 aa
  1>>>pF1KE5238 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4839+/-0.00108; mu= 13.4703+/- 0.064
 mean_var=64.0045+/-13.734, 0's: 0 Z-trim(102.3): 30  B-trim: 0 in 0/49
 Lambda= 0.160313
 statistics sampled from 6863 (6868) to 6863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.556), E-opt: 0.2 (0.211), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS2035.1 UNC50 gene_id:25972|Hs108|chr2          ( 259) 1752 414.2 4.6e-116
CCDS82485.1 UNC50 gene_id:25972|Hs108|chr2         ( 276) 1752 414.2 4.9e-116


>>CCDS2035.1 UNC50 gene_id:25972|Hs108|chr2               (259 aa)
 initn: 1752 init1: 1752 opt: 1752  Z-score: 2197.1  bits: 414.2 E(32554): 4.6e-116
Smith-Waterman score: 1752; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE5 MLPSTSVNSLVQGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQMDFEFAAWQMLYLFTSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MLPSTSVNSLVQGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQMDFEFAAWQMLYLFTSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DCVGVGLLIATLMWFISNKYLVKRQSRDYDVEWGYAFDVHLNAFYPLLVILHFIQLFFIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 DCVGVGLLIATLMWFISNKYLVKRQSRDYDVEWGYAFDVHLNAFYPLLVILHFIQLFFIN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTVILLYPFAPLILLYGLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 HVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTVILLYPFAPLILLYGLSL
              190       200       210       220       230       240

              250         
pF1KE5 ALGWNFTHTLCSFYKYRVK
       :::::::::::::::::::
CCDS20 ALGWNFTHTLCSFYKYRVK
              250         

>>CCDS82485.1 UNC50 gene_id:25972|Hs108|chr2              (276 aa)
 initn: 1752 init1: 1752 opt: 1752  Z-score: 2196.7  bits: 414.2 E(32554): 4.9e-116
Smith-Waterman score: 1752; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:18-276)

                                10        20        30        40   
pF1KE5                  MLPSTSVNSLVQGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQ
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS82 MFLQNTCKRNVFLPSRKMLPSTSVNSLVQGNGVLNSRDAARHTAGAKRYKYLRRLFRFRQ
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KE5 MDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVL
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KE5 DMGFFETIKLLLWVVLIDCVGVGLLIATLMWFISNKYLVKRQSRDYDVEWGYAFDVHLNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DMGFFETIKLLLWVVLIDCVGVGLLIATLMWFISNKYLVKRQSRDYDVEWGYAFDVHLNA
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KE5 FYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTV
              190       200       210       220       230       240

           230       240       250         
pF1KE5 ILLYPFAPLILLYGLSLALGWNFTHTLCSFYKYRVK
       ::::::::::::::::::::::::::::::::::::
CCDS82 ILLYPFAPLILLYGLSLALGWNFTHTLCSFYKYRVK
              250       260       270      




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:47:29 2016 done: Mon Nov  7 22:47:29 2016
 Total Scan time:  1.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]