FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5236, 251 aa
  1>>>pF1KE5236 251 - 251 aa - 251 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3581+/-0.000325; mu= 14.5937+/- 0.020
 mean_var=66.6579+/-13.240, 0's: 0 Z-trim(115.6): 8  B-trim: 0 in 0/50
 Lambda= 0.157090
 statistics sampled from 26180 (26181) to 26180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.307), width:  16
 Scan time:  5.840

The best scores are:                                      opt bits E(85289)
NP_060310 (OMIM: 611829) 39S ribosomal protein L16 ( 251) 1712 396.5 2.4e-110


>>NP_060310 (OMIM: 611829) 39S ribosomal protein L16, mi  (251 aa)
 initn: 1712 init1: 1712 opt: 1712  Z-score: 2102.0  bits: 396.5 E(85289): 2.4e-110
Smith-Waterman score: 1712; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE5 MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGK
              190       200       210       220       230       240

              250 
pF1KE5 YWGKFYMPKRV
       :::::::::::
NP_060 YWGKFYMPKRV
              250 




251 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:46:22 2016 done: Mon Nov  7 22:46:23 2016
 Total Scan time:  5.840 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]