FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5236, 251 aa
  1>>>pF1KE5236 251 - 251 aa - 251 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3940+/-0.000731; mu= 14.2671+/- 0.044
 mean_var=64.5759+/-12.923, 0's: 0 Z-trim(108.7): 16  B-trim: 0 in 0/50
 Lambda= 0.159602
 statistics sampled from 10388 (10391) to 10388 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.319), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS7976.1 MRPL16 gene_id:54948|Hs108|chr11        ( 251) 1712 402.5 1.4e-112


>>CCDS7976.1 MRPL16 gene_id:54948|Hs108|chr11             (251 aa)
 initn: 1712 init1: 1712 opt: 1712  Z-score: 2134.5  bits: 402.5 E(32554): 1.4e-112
Smith-Waterman score: 1712; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE5 MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MWRLLARASAPLLRVPLSDSWALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 KVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 HKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGK
              190       200       210       220       230       240

              250 
pF1KE5 YWGKFYMPKRV
       :::::::::::
CCDS79 YWGKFYMPKRV
              250 




251 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:46:22 2016 done: Mon Nov  7 22:46:22 2016
 Total Scan time:  1.790 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]