FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5235, 196 aa
  1>>>pF1KE5235 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8778+/-0.00101; mu= 7.4526+/- 0.060
 mean_var=130.9435+/-25.479, 0's: 0 Z-trim(108.5): 11  B-trim: 0 in 0/52
 Lambda= 0.112081
 statistics sampled from 10276 (10279) to 10276 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.316), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS42312.1 RPL19 gene_id:6143|Hs108|chr17         ( 196) 1259 214.2 4.1e-56
CCDS82113.1 RPL19 gene_id:6143|Hs108|chr17         ( 194) 1247 212.3 1.5e-55


>>CCDS42312.1 RPL19 gene_id:6143|Hs108|chr17              (196 aa)
 initn: 1259 init1: 1259 opt: 1259  Z-score: 1121.0  bits: 214.2 E(32554): 4.1e-56
Smith-Waterman score: 1259; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE5 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK
              130       140       150       160       170       180

              190      
pF1KE5 KEEIIKTLSKEEETKK
       ::::::::::::::::
CCDS42 KEEIIKTLSKEEETKK
              190      

>>CCDS82113.1 RPL19 gene_id:6143|Hs108|chr17              (194 aa)
 initn: 1247 init1: 1247 opt: 1247  Z-score: 1110.6  bits: 212.3 E(32554): 1.5e-55
Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 194 aa overlap (3-196:1-194)

               10        20        30        40        50        60
pF1KE5 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82   MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE5 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE5 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK
      120       130       140       150       160       170        

              190      
pF1KE5 KEEIIKTLSKEEETKK
       ::::::::::::::::
CCDS82 KEEIIKTLSKEEETKK
      180       190    




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:45:53 2016 done: Mon Nov  7 22:45:53 2016
 Total Scan time:  1.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]