Result of FASTA (ccds) for
pFN21AE5230
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5230, 208 aa
1>>>pF1KE5230 208 - 208 aa - 208 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3314+/-0.0007; mu= 9.4562+/- 0.042
mean_var=93.8482+/-18.699, 0's: 0 Z-trim(111.9): 35 B-trim: 0 in 0/53
Lambda= 0.132392
statistics sampled from 12732 (12763) to 12732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.392), width: 16
Scan time: 1.740
The best scores are: opt bits E(32554)
CCDS35211.1 SCML1 gene_id:6322|Hs108|chrX ( 208) 1411 278.8 1.6e-75
CCDS14182.2 SCML1 gene_id:6322|Hs108|chrX ( 302) 1411 278.9 2.2e-75
CCDS35210.1 SCML1 gene_id:6322|Hs108|chrX ( 329) 1411 278.9 2.4e-75
CCDS14185.1 SCML2 gene_id:10389|Hs108|chrX ( 700) 380 82.2 8.6e-16
CCDS75500.1 SCML4 gene_id:256380|Hs108|chr6 ( 172) 333 72.9 1.3e-13
CCDS69163.1 SCML4 gene_id:256380|Hs108|chr6 ( 356) 333 73.1 2.5e-13
CCDS5060.2 SCML4 gene_id:256380|Hs108|chr6 ( 414) 333 73.1 2.8e-13
CCDS53302.1 SCMH1 gene_id:22955|Hs108|chr1 ( 599) 318 70.3 2.8e-12
CCDS30688.1 SCMH1 gene_id:22955|Hs108|chr1 ( 660) 318 70.3 3e-12
CCDS53303.1 SCMH1 gene_id:22955|Hs108|chr1 ( 480) 309 68.5 7.6e-12
CCDS53301.1 SCMH1 gene_id:22955|Hs108|chr1 ( 577) 309 68.6 8.8e-12
CCDS461.1 SCMH1 gene_id:22955|Hs108|chr1 ( 591) 309 68.6 9e-12
CCDS53304.1 SCMH1 gene_id:22955|Hs108|chr1 ( 648) 309 68.6 9.8e-12
>>CCDS35211.1 SCML1 gene_id:6322|Hs108|chrX (208 aa)
initn: 1411 init1: 1411 opt: 1411 Z-score: 1469.2 bits: 278.8 E(32554): 1.6e-75
Smith-Waterman score: 1411; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KE5 MKKNEVYETFSYPESYSPTLPVSRRENNSPSNLPRPSFCMEEYQRAELEEDPILSRTPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKKNEVYETFSYPESYSPTLPVSRRENNSPSNLPRPSFCMEEYQRAELEEDPILSRTPSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VHPSDFSEHNCQPYYASDGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VHPSDFSEHNCQPYYASDGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSPVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NDGYIEEGSITKHPSTWSVEAVVLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTSDVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NDGYIEEGSITKHPSTWSVEAVVLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTSDVLL
130 140 150 160 170 180
190 200
pF1KE5 KHLGVKLGTAVKLCYYIDRLKQGKCFEN
::::::::::::::::::::::::::::
CCDS35 KHLGVKLGTAVKLCYYIDRLKQGKCFEN
190 200
>>CCDS14182.2 SCML1 gene_id:6322|Hs108|chrX (302 aa)
initn: 1411 init1: 1411 opt: 1411 Z-score: 1466.7 bits: 278.9 E(32554): 2.2e-75
Smith-Waterman score: 1411; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:95-302)
10 20 30
pF1KE5 MKKNEVYETFSYPESYSPTLPVSRRENNSP
::::::::::::::::::::::::::::::
CCDS14 FHARSLWTNHKRYGYKKHSYRLVKKLKLQKMKKNEVYETFSYPESYSPTLPVSRRENNSP
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE5 SNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHNCQPYYASDGATYGSSSGLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHNCQPYYASDGATYGSSSGLCL
130 140 150 160 170 180
100 110 120 130 140 150
pF1KE5 GNPRADSIHNTYSTDHASAAPPSVTRSPVENDGYIEEGSITKHPSTWSVEAVVLFLKQTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GNPRADSIHNTYSTDHASAAPPSVTRSPVENDGYIEEGSITKHPSTWSVEAVVLFLKQTD
190 200 210 220 230 240
160 170 180 190 200
pF1KE5 PLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN
250 260 270 280 290 300
>>CCDS35210.1 SCML1 gene_id:6322|Hs108|chrX (329 aa)
initn: 1411 init1: 1411 opt: 1411 Z-score: 1466.2 bits: 278.9 E(32554): 2.4e-75
Smith-Waterman score: 1411; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:122-329)
10 20 30
pF1KE5 MKKNEVYETFSYPESYSPTLPVSRRENNSP
::::::::::::::::::::::::::::::
CCDS35 FHARSLWTNHKRYGYKKHSYRLVKKLKLQKMKKNEVYETFSYPESYSPTLPVSRRENNSP
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE5 SNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHNCQPYYASDGATYGSSSGLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHNCQPYYASDGATYGSSSGLCL
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE5 GNPRADSIHNTYSTDHASAAPPSVTRSPVENDGYIEEGSITKHPSTWSVEAVVLFLKQTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GNPRADSIHNTYSTDHASAAPPSVTRSPVENDGYIEEGSITKHPSTWSVEAVVLFLKQTD
220 230 240 250 260 270
160 170 180 190 200
pF1KE5 PLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN
280 290 300 310 320
>>CCDS14185.1 SCML2 gene_id:10389|Hs108|chrX (700 aa)
initn: 347 init1: 347 opt: 380 Z-score: 397.0 bits: 82.2 E(32554): 8.6e-16
Smith-Waterman score: 384; 35.8% identity (62.3% similar) in 212 aa overlap (8-204:502-698)
10 20 30
pF1KE5 MKKNEVYETFSYPESYSPTLPVSRR--ENNSP-----
.: : :: :: ... .. :
CCDS14 GHTHSSAEHDKNQSAKEDVTERQSTKRSPQQTVPYVVPLSPKLPKTKEYASEGEPLFAGG
480 490 500 510 520 530
40 50 60 70 80
pF1KE5 SNLPRPSFCMEEYQRAELEEDPILS---RTPSPVHPS---DFSEHNCQPYYASDGATYGS
: .:. :. . . :. :. :.: .: : :::. .. :.
CCDS14 SAIPKEENLSEDSKSSSLNSGNYLNPACRNPMYIHTSVSQDFSR-----------SVPGT
540 550 560 570 580
90 100 110 120 130 140
pF1KE5 SSGLCLGN--PRADSIHNTYSTDHASAAPPSVTRSPVENDGYIEEGSITKHPSTWSVEAV
.:. .:. :... . .. .. : :: .. : . . ...: ..: ::::::. :
CCDS14 TSSPLVGDISPKSSPHEVKFQMQRKSEAPSYIA---VPDPSVLKQG-FSKDPSTWSVDEV
590 600 610 620 630
150 160 170 180 190 200
pF1KE5 VLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYIDRLKQ
. :.:.::: ::.::::.::::::::.:: :::..:..:.::: :.::::::..::.
CCDS14 IQFMKHTDPQISGPLADLFRQHEIDGKALFLLKSDVMMKYMGLKLGPALKLCYYIEKLKE
640 650 660 670 680 690
pF1KE5 GKCFEN
::
CCDS14 GKYS
700
>>CCDS75500.1 SCML4 gene_id:256380|Hs108|chr6 (172 aa)
initn: 371 init1: 320 opt: 333 Z-score: 357.6 bits: 72.9 E(32554): 1.3e-13
Smith-Waterman score: 338; 41.7% identity (67.9% similar) in 156 aa overlap (61-204:19-171)
40 50 60 70 80
pF1KE5 SNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHNCQPYYASDG-------ATYG
.::: : :. ..:. :: :
CCDS75 MNRYSVDTSASTFNHRGSLHPS--SSLYCKRQNSGDSHLGGGPAATAG
10 20 30 40
90 100 110 120 130
pF1KE5 S--SSGLCLGNPRADSIHNTYSTDHASAAPPSVTR---SPVENDGYIEEGSITKHPSTWS
. .: . :.: : ... :. . ... .: :: . :. . ...::.:.
CCDS75 GPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQ-DAQDARRPRSRNPSAWT
50 60 70 80 90 100
140 150 160 170 180 190
pF1KE5 VEAVVLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYID
:: :: :.:..:: :: : :.:::.:::::.::::: ::...:.::.::: :.::::.::
CCDS75 VEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMVMKYLGLKLGPALKLCYHID
110 120 130 140 150 160
200
pF1KE5 RLKQGKCFEN
.:::.:
CCDS75 KLKQAKF
170
>>CCDS69163.1 SCML4 gene_id:256380|Hs108|chr6 (356 aa)
initn: 351 init1: 320 opt: 333 Z-score: 352.9 bits: 73.1 E(32554): 2.5e-13
Smith-Waterman score: 338; 41.7% identity (67.9% similar) in 156 aa overlap (61-204:203-355)
40 50 60 70 80
pF1KE5 SNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHNCQPYYASDG-------ATYG
.::: : :. ..:. :: :
CCDS69 VTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPS--SSLYCKRQNSGDSHLGGGPAATAG
180 190 200 210 220 230
90 100 110 120 130
pF1KE5 S--SSGLCLGNPRADSIHNTYSTDHASAAPPSVTR---SPVENDGYIEEGSITKHPSTWS
. .: . :.: : ... :. . ... .: :: . :. . ...::.:.
CCDS69 GPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQ-DAQDARRPRSRNPSAWT
240 250 260 270 280
140 150 160 170 180 190
pF1KE5 VEAVVLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYID
:: :: :.:..:: :: : :.:::.:::::.::::: ::...:.::.::: :.::::.::
CCDS69 VEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMVMKYLGLKLGPALKLCYHID
290 300 310 320 330 340
200
pF1KE5 RLKQGKCFEN
.:::.:
CCDS69 KLKQAKF
350
>>CCDS5060.2 SCML4 gene_id:256380|Hs108|chr6 (414 aa)
initn: 370 init1: 320 opt: 333 Z-score: 351.9 bits: 73.1 E(32554): 2.8e-13
Smith-Waterman score: 338; 41.7% identity (67.9% similar) in 156 aa overlap (61-204:261-413)
40 50 60 70 80
pF1KE5 SNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHNCQPYYASDG-------ATYG
.::: : :. ..:. :: :
CCDS50 VTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPS--SSLYCKRQNSGDSHLGGGPAATAG
240 250 260 270 280
90 100 110 120 130
pF1KE5 S--SSGLCLGNPRADSIHNTYSTDHASAAPPSVTR---SPVENDGYIEEGSITKHPSTWS
. .: . :.: : ... :. . ... .: :: . :. . ...::.:.
CCDS50 GPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQ-DAQDARRPRSRNPSAWT
290 300 310 320 330 340
140 150 160 170 180 190
pF1KE5 VEAVVLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYID
:: :: :.:..:: :: : :.:::.:::::.::::: ::...:.::.::: :.::::.::
CCDS50 VEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMVMKYLGLKLGPALKLCYHID
350 360 370 380 390 400
200
pF1KE5 RLKQGKCFEN
.:::.:
CCDS50 KLKQAKF
410
>>CCDS53302.1 SCMH1 gene_id:22955|Hs108|chr1 (599 aa)
initn: 327 init1: 240 opt: 318 Z-score: 334.0 bits: 70.3 E(32554): 2.8e-12
Smith-Waterman score: 318; 37.1% identity (62.4% similar) in 178 aa overlap (33-204:427-598)
10 20 30 40 50 60
pF1KE5 KNEVYETFSYPESYSPTLPVSRRENNSPSNLPRPSFCMEEYQRAELEEDPILSRTPSPVH
:: .: . . :: : . : .
CCDS53 RSDNLFGNQPFTQTHLSLTAIEYSHSHDRYLPGETFVLGNSLARSLE--PHSDSMDSASN
400 410 420 430 440 450
70 80 90 100 110 120
pF1KE5 PSDF--SEHNCQPYYASDGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSPVE
:... . . .: .: : ...:.. :. .. : : ...:::
CCDS53 PTNLVSTSQRHRPLLSSCGLPPSTASAVRRLCSRGVLKGSNERRDMESFW--KLNRSP-G
460 470 480 490 500 510
130 140 150 160 170
pF1KE5 NDGYIEEGSITK----HPSTWSVEAVVLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTS
.: :.: . .. ::.:.:: :. :....:: : : .::::.::::::::::: :
CCDS53 SDRYLESRDASRLSGRDPSSWTVEDVMQFVREADP-QLGPHADLFRKHEIDGKALLLLRS
520 530 540 550 560 570
180 190 200
pF1KE5 DVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN
:...:..:.::: :.:: :.::::::::
CCDS53 DMMMKYMGLKLGPALKLSYHIDRLKQGKF
580 590
>>CCDS30688.1 SCMH1 gene_id:22955|Hs108|chr1 (660 aa)
initn: 329 init1: 240 opt: 318 Z-score: 333.4 bits: 70.3 E(32554): 3e-12
Smith-Waterman score: 318; 37.1% identity (62.4% similar) in 178 aa overlap (33-204:488-659)
10 20 30 40 50 60
pF1KE5 KNEVYETFSYPESYSPTLPVSRRENNSPSNLPRPSFCMEEYQRAELEEDPILSRTPSPVH
:: .: . . :: : . : .
CCDS30 RSDNLFGNQPFTQTHLSLTAIEYSHSHDRYLPGETFVLGNSLARSLE--PHSDSMDSASN
460 470 480 490 500 510
70 80 90 100 110 120
pF1KE5 PSDF--SEHNCQPYYASDGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSPVE
:... . . .: .: : ...:.. :. .. : : ...:::
CCDS30 PTNLVSTSQRHRPLLSSCGLPPSTASAVRRLCSRGVLKGSNERRDMESFW--KLNRSP-G
520 530 540 550 560 570
130 140 150 160 170
pF1KE5 NDGYIEEGSITK----HPSTWSVEAVVLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTS
.: :.: . .. ::.:.:: :. :....:: : : .::::.::::::::::: :
CCDS30 SDRYLESRDASRLSGRDPSSWTVEDVMQFVREADP-QLGPHADLFRKHEIDGKALLLLRS
580 590 600 610 620 630
180 190 200
pF1KE5 DVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN
:...:..:.::: :.:: :.::::::::
CCDS30 DMMMKYMGLKLGPALKLSYHIDRLKQGKF
640 650 660
>>CCDS53303.1 SCMH1 gene_id:22955|Hs108|chr1 (480 aa)
initn: 326 init1: 240 opt: 309 Z-score: 326.2 bits: 68.5 E(32554): 7.6e-12
Smith-Waterman score: 314; 38.4% identity (63.2% similar) in 185 aa overlap (48-204:299-479)
20 30 40 50 60 70
pF1KE5 PTLPVSRRENNSPSNLPRPSFCMEEYQRAELEEDPILSRTP-SPVHPS----DFSEHNCQ
:. : ... : . .: : ..: :. .
CCDS53 VFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTAIEYS-HSHD
270 280 290 300 310 320
80 90 100 110
pF1KE5 PYYASDGATYGSSSGLCLGNPRADSIH------NTYSTDH-------ASAAPPSVTRSPV
: .. . :.: . : .:..::. : ::.. . . ::: : : :
CCDS53 RYLPGETFVLGNSLARSL-EPHSDSMDSASNPTNLVSTSQRHRPLLSSCGLPPS-TASAV
330 340 350 360 370 380
120 130 140 150 160
pF1KE5 E------NDGYIEEGSITK----HPSTWSVEAVVLFLKQTDPLALCPLVDLFRSHEIDGK
. .: :.: . .. ::.:.:: :. :....:: : : .::::.::::::
CCDS53 RRLCSRGSDRYLESRDASRLSGRDPSSWTVEDVMQFVREADP-QLGPHADLFRKHEIDGK
390 400 410 420 430 440
170 180 190 200
pF1KE5 ALLLLTSDVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN
::::: ::...:..:.::: :.:: :.::::::::
CCDS53 ALLLLRSDMMMKYMGLKLGPALKLSYHIDRLKQGKF
450 460 470 480
208 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:42:43 2016 done: Mon Nov 7 22:42:44 2016
Total Scan time: 1.740 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]