FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5229, 186 aa
  1>>>pF1KE5229 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7432+/-0.000738; mu= 12.7551+/- 0.045
 mean_var=111.9576+/-22.346, 0's: 0 Z-trim(111.5): 121  B-trim: 0 in 0/50
 Lambda= 0.121213
 statistics sampled from 12328 (12466) to 12328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.383), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS7597.1 VAX1 gene_id:11023|Hs108|chr10          ( 186) 1240 226.7 6.6e-60
CCDS44483.1 VAX1 gene_id:11023|Hs108|chr10         ( 334)  960 178.0 5.5e-45
CCDS1911.1 VAX2 gene_id:25806|Hs108|chr2           ( 290)  488 95.3 3.5e-20


>>CCDS7597.1 VAX1 gene_id:11023|Hs108|chr10               (186 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1189.0  bits: 226.7 E(32554): 6.6e-60
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KE5 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG
              130       140       150       160       170       180

             
pF1KE5 RGWQPL
       ::::::
CCDS75 RGWQPL
             

>>CCDS44483.1 VAX1 gene_id:11023|Hs108|chr10              (334 aa)
 initn: 961 init1: 944 opt: 960  Z-score: 921.2  bits: 178.0 E(32554): 5.5e-45
Smith-Waterman score: 960; 89.8% identity (93.4% similar) in 167 aa overlap (1-167:1-162)

               10        20        30        40        50        60
pF1KE5 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGG
       :::::::::::::::::::::::..   .:.:      :::: . :.             
CCDS44 RCQYVVGRERTELARQLNLSETQVKVWFQNRR-----TKQKKDQGKDSELRSVVSETAAT
              130       140       150            160       170     

                                                                   
pF1KE5 RGWQPL                                                      
                                                                   
CCDS44 CSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPG
         180       190       200       210       220       230     

>>CCDS1911.1 VAX2 gene_id:25806|Hs108|chr2                (290 aa)
 initn: 508 init1: 461 opt: 488  Z-score: 475.9  bits: 95.3 E(32554): 3.5e-20
Smith-Waterman score: 488; 62.6% identity (80.2% similar) in 131 aa overlap (46-173:45-174)

          20        30        40        50        60        70     
pF1KE5 AEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP---D
                                     :  :. ..: :.   . . :..   :   :
CCDS19 RAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRESGADSDGQPGPGEAD
           20        30        40        50        60        70    

             80        90       100       110       120       130  
pF1KE5 YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
       .:::::::::::.::::.::::::::::::::::::::::::::::::::::::::::::
CCDS19 HCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE
           80        90       100       110       120       130    

            140       150       160       170       180            
pF1KE5 LARQLNLSETQANSEENNERFKRGIKKQKKKRKKEPANDESRRGDSGGRGWQPL      
       :::::::::::..   .:.: :.  : :..  .:. ... :                   
CCDS19 LARQLNLSETQVKVWFQNRRTKQK-KDQSRDLEKRASSSASEAFATSNILRLLEQGRLLS
          140       150        160       170       180       190   

CCDS19 VPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPPLPPPLPAVCFSSA
           200       210       220       230       240       250   




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:42:17 2016 done: Mon Nov  7 22:42:17 2016
 Total Scan time:  1.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]