FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5226, 176 aa
  1>>>pF1KE5226 176 - 176 aa - 176 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0007+/-0.000343; mu= 13.8288+/- 0.021
 mean_var=59.8142+/-12.213, 0's: 0 Z-trim(114.3): 13  B-trim: 312 in 1/50
 Lambda= 0.165833
 statistics sampled from 24057 (24065) to 24057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.282), width:  16
 Scan time:  4.980

The best scores are:                                      opt bits E(85289)
NP_115990 (OMIM: 251120,608419) methylmalonyl-CoA  ( 176) 1131 278.7 3.4e-75
XP_005264670 (OMIM: 251120,608419) PREDICTED: meth ( 122)  459 117.8 6.3e-27


>>NP_115990 (OMIM: 251120,608419) methylmalonyl-CoA epim  (176 aa)
 initn: 1131 init1: 1131 opt: 1131  Z-score: 1470.9  bits: 278.7 E(85289): 3.4e-75
Smith-Waterman score: 1131; 99.4% identity (99.4% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KE5 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGLDSPIAGFLQKNKAGGM
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_115 AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGRDSPIAGFLQKNKAGGM
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KE5 HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA
              130       140       150       160       170      

>>XP_005264670 (OMIM: 251120,608419) PREDICTED: methylma  (122 aa)
 initn: 503 init1: 457 opt: 459  Z-score: 604.4  bits: 117.8 E(85289): 6.3e-27
Smith-Waterman score: 657; 69.3% identity (69.3% similar) in 176 aa overlap (1-176:1-122)

               10        20        30        40        50        60
pF1KE5 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGLDSPIAGFLQKNKAGGM
       :::::::::::::                                               
XP_005 AAAFYKNILGAQV-----------------------------------------------
               70                                                  

              130       140       150       160       170      
pF1KE5 HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA
              :::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 -------DNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA
                   80        90       100       110       120  




176 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:41:11 2016 done: Mon Nov  7 22:41:12 2016
 Total Scan time:  4.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]