FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5225, 250 aa
  1>>>pF1KE5225 250 - 250 aa - 250 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3458+/-0.00084; mu= 8.8764+/- 0.051
 mean_var=175.1442+/-34.067, 0's: 0 Z-trim(114.2): 4  B-trim: 0 in 0/53
 Lambda= 0.096912
 statistics sampled from 14754 (14757) to 14754 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.453), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS9720.1 GCH1 gene_id:2643|Hs108|chr14           ( 250) 1673 244.9 3.8e-65
CCDS41954.1 GCH1 gene_id:2643|Hs108|chr14          ( 233) 1413 208.5 3.2e-54
CCDS45110.1 GCH1 gene_id:2643|Hs108|chr14          ( 213) 1407 207.6 5.4e-54


>>CCDS9720.1 GCH1 gene_id:2643|Hs108|chr14                (250 aa)
 initn: 1673 init1: 1673 opt: 1673  Z-score: 1283.0  bits: 244.9 E(32554): 3.8e-65
Smith-Waterman score: 1673; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KE5 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT
              190       200       210       220       230       240

              250
pF1KE5 REEFLTLIRS
       ::::::::::
CCDS97 REEFLTLIRS
              250

>>CCDS41954.1 GCH1 gene_id:2643|Hs108|chr14               (233 aa)
 initn: 1407 init1: 1407 opt: 1413  Z-score: 1086.9  bits: 208.5 E(32554): 3.2e-54
Smith-Waterman score: 1413; 94.6% identity (96.9% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KE5 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT
       :::::::::::::::::::::::::::::.     .:.. . :                 
CCDS41 VQERLTKQIAVAITEALRPAGVGVVVEATKSNKYNKGLSPLLSSCHLFVAILK       
              190       200       210       220       230          

              250
pF1KE5 REEFLTLIRS

>>CCDS45110.1 GCH1 gene_id:2643|Hs108|chr14               (213 aa)
 initn: 1407 init1: 1407 opt: 1407  Z-score: 1082.9  bits: 207.6 E(32554): 5.4e-54
Smith-Waterman score: 1407; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KE5 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT
       :::::::::::::::::::::::::::::                               
CCDS45 VQERLTKQIAVAITEALRPAGVGVVVEATSAEP                           
              190       200       210                              




250 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:40:31 2016 done: Mon Nov  7 22:40:32 2016
 Total Scan time:  2.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]