FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5219, 206 aa
  1>>>pF1KE5219 206 - 206 aa - 206 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5466+/-0.000656; mu= 12.8268+/- 0.039
 mean_var=70.8492+/-14.212, 0's: 0 Z-trim(110.9): 20  B-trim: 0 in 0/51
 Lambda= 0.152373
 statistics sampled from 11955 (11965) to 11955 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.368), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS11711.1 MRPL58 gene_id:3396|Hs108|chr17        ( 206) 1381 311.9 1.8e-85


>>CCDS11711.1 MRPL58 gene_id:3396|Hs108|chr17             (206 aa)
 initn: 1381 init1: 1381 opt: 1381  Z-score: 1648.1  bits: 311.9 E(32554): 1.8e-85
Smith-Waterman score: 1381; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KE5 MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI
              130       140       150       160       170       180

              190       200      
pF1KE5 ENMNRERLRQKRIHSAVKTSRRVDMD
       ::::::::::::::::::::::::::
CCDS11 ENMNRERLRQKRIHSAVKTSRRVDMD
              190       200      




206 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:37:13 2016 done: Mon Nov  7 22:37:14 2016
 Total Scan time:  2.110 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]