FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5218, 190 aa
  1>>>pF1KE5218 190 - 190 aa - 190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3243+/-0.000798; mu= 12.4494+/- 0.048
 mean_var=56.6610+/-11.711, 0's: 0 Z-trim(107.0): 16  B-trim: 67 in 1/49
 Lambda= 0.170385
 statistics sampled from 9291 (9293) to 9291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width:  16
 Scan time:  1.350

The best scores are:                                      opt bits E(32554)
CCDS6789.1 SLC31A1 gene_id:1317|Hs108|chr9         ( 190) 1272 320.5 3.8e-88


>>CCDS6789.1 SLC31A1 gene_id:1317|Hs108|chr9              (190 aa)
 initn: 1272 init1: 1272 opt: 1272  Z-score: 1696.0  bits: 320.5 E(32554): 3.8e-88
Smith-Waterman score: 1272; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KE5 MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 KTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKA
              130       140       150       160       170       180

              190
pF1KE5 VVVDITEHCH
       ::::::::::
CCDS67 VVVDITEHCH
              190




190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:36:40 2016 done: Mon Nov  7 22:36:41 2016
 Total Scan time:  1.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]