FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5214, 215 aa
  1>>>pF1KE5214 215 - 215 aa - 215 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2245+/-0.000759; mu= 15.1973+/- 0.046
 mean_var=96.0581+/-19.689, 0's: 0 Z-trim(110.6): 55  B-trim: 0 in 0/54
 Lambda= 0.130860
 statistics sampled from 11650 (11700) to 11650 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.359), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS8390.1 SCN2B gene_id:6327|Hs108|chr11          ( 215) 1466 286.4 9.1e-78
CCDS8393.1 MPZL2 gene_id:10205|Hs108|chr11         ( 215)  324 70.8 7.3e-13


>>CCDS8390.1 SCN2B gene_id:6327|Hs108|chr11               (215 aa)
 initn: 1466 init1: 1466 opt: 1466  Z-score: 1509.6  bits: 286.4 E(32554): 9.1e-78
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KE5 MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV
              130       140       150       160       170       180

              190       200       210     
pF1KE5 KCVRRKKEQKLSTDDLKTEEEGKTDGEGNPDDGAK
       :::::::::::::::::::::::::::::::::::
CCDS83 KCVRRKKEQKLSTDDLKTEEEGKTDGEGNPDDGAK
              190       200       210     

>>CCDS8393.1 MPZL2 gene_id:10205|Hs108|chr11              (215 aa)
 initn: 261 init1: 202 opt: 324  Z-score: 344.4  bits: 70.8 E(32554): 7.3e-13
Smith-Waterman score: 324; 27.9% identity (66.7% similar) in 201 aa overlap (9-207:8-204)

               10        20        30        40        50        60
pF1KE5 MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH
               : .. : :..:  . . :  ..:. .  .:...::.:::: :::.:   :. 
CCDS83  MYGKSSTRAVLLLLGIQL--TALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGD
                10          20        30        40        50       

               70        80        90       100       110       120
pF1KE5 KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE
         ....:...  ..  :.. . ...  ..    ::.::: ..::: .::.:..: ..: .
CCDS83 A-LTVTWNFRPLDGGPEQFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFD
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KE5 DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV
       :.: :.: . ::::     :.:.:.:.      .   .:. .: :. ... ....:... 
CCDS83 DNGTYTCQVKNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIG-SACALMIIIVIVVVLF
        120       130       140       150        160       170     

                190       200       210        
pF1KE5 KCVRRKK--EQKLSTDDLKTEEEGKTDGEGNPDDGAK   
       .  :.:.  :.  .. ..:..:: . . :           
CCDS83 QHYRKKRWAERAHKVVEIKSKEEERLNQEKKVSVYLEDTD
         180       190       200       210     




215 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:34:25 2016 done: Mon Nov  7 22:34:25 2016
 Total Scan time:  1.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]