Result of FASTA (ccds) for
pFN21AE5211
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5211, 207 aa
1>>>pF1KE5211 207 - 207 aa - 207 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1840+/-0.000688; mu= 14.1389+/- 0.041
mean_var=62.3136+/-12.317, 0's: 0 Z-trim(109.4): 18 B-trim: 0 in 0/51
Lambda= 0.162474
statistics sampled from 10838 (10848) to 10838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.333), width: 16
Scan time: 2.010
The best scores are: opt bits E(32554)
CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX ( 207) 1451 348.1 2.2e-96
CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 ( 220) 554 137.9 4.6e-33
CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 ( 211) 528 131.8 3e-31
CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 ( 224) 502 125.7 2.2e-29
>>CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX (207 aa)
initn: 1451 init1: 1451 opt: 1451 Z-score: 1843.8 bits: 348.1 E(32554): 2.2e-96
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KE5 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLYQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLYQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 TCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEK
130 140 150 160 170 180
190 200
pF1KE5 GFQSRHLACLPREPGLCTWQSLRSQIA
:::::::::::::::::::::::::::
CCDS14 GFQSRHLACLPREPGLCTWQSLRSQIA
190 200
>>CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 (220 aa)
initn: 547 init1: 199 opt: 554 Z-score: 707.0 bits: 137.9 E(32554): 4.6e-33
Smith-Waterman score: 554; 42.8% identity (67.7% similar) in 201 aa overlap (7-199:10-203)
10 20 30 40 50
pF1KE5 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQ-TT
:: :.::: :. :. ::.: : ::: ::::.:.::::: :. ::.. .
CCDS11 MGAAARTLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGND
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 LY----QR--YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAG
.: .: ::::. ::.:: . ::.:.:: .::: .. .:.::::
CCDS11 IYGNPIKRIQYEIKQIKMFKGPE-----KDIEFIYTAPSSAVCGVSLDVGGK-KEYLIAG
70 80 90 100 110
120 130 140 150 160
pF1KE5 KLQ-DGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCL
: . :: .::: :.:..::..:: .:...... : .::: : . : ::: ..: .::
CCDS11 KAEGDGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCE-CKITRCPMIPCYISSPDECL
120 130 140 150 160 170
170 180 190 200
pF1KE5 WTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA
: : . . . .: :.. .::. : : :.:
CCDS11 WMDWVTEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP
180 190 200 210 220
>>CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 (211 aa)
initn: 512 init1: 160 opt: 528 Z-score: 674.4 bits: 131.8 E(32554): 3e-31
Smith-Waterman score: 528; 38.6% identity (65.8% similar) in 202 aa overlap (1-199:1-194)
10 20 30 40 50
pF1KE5 MAPFEPLASGILLLLWLIAP--SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLY
:.:. : .:: : .. ..:::: : ::: ::::::.::::: :: :.. .
CCDS13 MTPWLGLI--VLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFG
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 QR-YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLL
: ::. :::.:: . .....: : ::.:: . . . ..:..:.. :: .
CCDS13 TLVYTIKQMKMYRGFTKM---PHVQYIHTEASESLCGL--KLEVNKYQYLLTGRVYDGKM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 HITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQG
. :.:: :..:.:.::.:.. : .::. : . : .:: . : ..:::::.: .
CCDS13 YTGLCNFVERWDQLTLSQRKGLNYRYHLGCN-CKIKSCYYLPCFVTSKNECLWTDMLSNF
120 130 140 150 160 170
180 190 200
pF1KE5 SEKGFQSRHLACLPREPGLCTWQSLRSQIA
. :.::.: ::. .. : :.:
CCDS13 GYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP
180 190 200 210
>>CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 (224 aa)
initn: 411 init1: 152 opt: 502 Z-score: 641.1 bits: 125.7 E(32554): 2.2e-29
Smith-Waterman score: 502; 37.4% identity (67.0% similar) in 206 aa overlap (6-199:7-207)
10 20 30 40 50
pF1KE5 MAPFEPLASGILLL--LWLIAP---SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEV--
: : .::: : :. : ..::.:.: ::: .:.: ::::::. . :
CCDS26 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA
10 20 30 40 50 60
60 70 80 90 100
pF1KE5 ----NQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLI
.: . :::::. ::.:::. . :....::: :.:: . : ....:.
CCDS26 SADPADTEKMLRYEIKQIKMFKGFEKV---KDVQYIYTPFDSSLCGV-KLEANSQKQYLL
70 80 90 100 110
110 120 130 140 150 160
pF1KE5 AGK-LQDGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTH
.:. :.:: . : :... ::..:::.::..... : ..: : . : ..:: ... ..
CCDS26 TGQVLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCG-CQITTCYTVPCTISAPNE
120 130 140 150 160 170
170 180 190 200
pF1KE5 CLWTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA
::::: ::. . :.:..: .:. . : :.:
CCDS26 CLWTDWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP
180 190 200 210 220
207 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:32:45 2016 done: Mon Nov 7 22:32:45 2016
Total Scan time: 2.010 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]