Result of FASTA (omim) for
pFN21AE5205
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5205, 240 aa
1>>>pF1KE5205 240 - 240 aa - 240 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5668+/-0.000321; mu= 1.0639+/- 0.020
mean_var=201.0454+/-40.525, 0's: 0 Z-trim(123.3): 39 B-trim: 1438 in 1/59
Lambda= 0.090454
statistics sampled from 42776 (42816) to 42776 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.502), width: 16
Scan time: 6.310
The best scores are: opt bits E(85289)
NP_004485 (OMIM: 600339) hepatoma-derived growth f ( 240) 1621 222.9 3.9e-58
NP_001119522 (OMIM: 600339) hepatoma-derived growt ( 256) 1413 195.8 6e-50
NP_001119523 (OMIM: 600339) hepatoma-derived growt ( 233) 1408 195.1 8.8e-50
NP_001306117 (OMIM: 600339) hepatoma-derived growt ( 208) 1387 192.3 5.4e-49
NP_001306116 (OMIM: 600339) hepatoma-derived growt ( 208) 1387 192.3 5.4e-49
XP_011507757 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 1387 192.3 5.4e-49
XP_011507755 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 1387 192.3 5.4e-49
XP_011507756 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 1387 192.3 5.4e-49
NP_001306115 (OMIM: 600339) hepatoma-derived growt ( 263) 1389 192.7 5.4e-49
NP_057157 (OMIM: 616643) hepatoma-derived growth f ( 203) 624 92.8 5e-19
XP_006720617 (OMIM: 616643) PREDICTED: hepatoma-de ( 212) 624 92.8 5.2e-19
NP_001304829 (OMIM: 603620) PC4 and SFRS1-interact ( 324) 601 89.9 5.7e-18
NP_001304827 (OMIM: 603620) PC4 and SFRS1-interact ( 329) 576 86.6 5.6e-17
NP_066967 (OMIM: 603620) PC4 and SFRS1-interacting ( 333) 576 86.6 5.6e-17
NP_001121689 (OMIM: 603620) PC4 and SFRS1-interact ( 530) 576 86.8 8.1e-17
NP_150091 (OMIM: 603620) PC4 and SFRS1-interacting ( 530) 576 86.8 8.1e-17
>>NP_004485 (OMIM: 600339) hepatoma-derived growth facto (240 aa)
initn: 1621 init1: 1621 opt: 1621 Z-score: 1164.7 bits: 222.9 E(85289): 3.9e-58
Smith-Waterman score: 1621; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 EAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
190 200 210 220 230 240
>>NP_001119522 (OMIM: 600339) hepatoma-derived growth fa (256 aa)
initn: 1413 init1: 1413 opt: 1413 Z-score: 1017.7 bits: 195.8 E(85289): 6e-50
Smith-Waterman score: 1413; 99.1% identity (99.1% similar) in 214 aa overlap (27-240:43-256)
10 20 30 40 50
pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETA
: :::::::::::::::::::::::::::
NP_001 LGHLLATKLKRFLLSKGGRRAQIPDVSRATPHTIDEMPEAAVKSTANKYQVFFFGTHETA
20 30 40 50 60 70
60 70 80 90 100 110
pF1KE5 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEP
80 90 100 110 120 130
120 130 140 150 160 170
pF1KE5 EAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPE
140 150 160 170 180 190
180 190 200 210 220 230
pF1KE5 GEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRD
200 210 220 230 240 250
240
pF1KE5 HESL
::::
NP_001 HESL
>>NP_001119523 (OMIM: 600339) hepatoma-derived growth fa (233 aa)
initn: 1408 init1: 1408 opt: 1408 Z-score: 1014.7 bits: 195.1 E(85289): 8.8e-50
Smith-Waterman score: 1408; 99.5% identity (99.5% similar) in 213 aa overlap (28-240:21-233)
10 20 30 40 50 60
pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP
: :::::::::::::::::::::::::::::::
NP_001 MEQRAGGNRVQTSTLNCAGAAVIDEMPEAAVKSTANKYQVFFFGTHETAFLGP
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE5 EAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
180 190 200 210 220 230
>>NP_001306117 (OMIM: 600339) hepatoma-derived growth fa (208 aa)
initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49
Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208)
10 20 30 40 50 60
pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD
::::::::::::::::::::::::::::::
NP_001 MPEAAVKSTANKYQVFFFGTHETAFLGPKD
10 20 30
70 80 90 100 110 120
pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
160 170 180 190 200
>>NP_001306116 (OMIM: 600339) hepatoma-derived growth fa (208 aa)
initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49
Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208)
10 20 30 40 50 60
pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD
::::::::::::::::::::::::::::::
NP_001 MPEAAVKSTANKYQVFFFGTHETAFLGPKD
10 20 30
70 80 90 100 110 120
pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
160 170 180 190 200
>>XP_011507757 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa)
initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49
Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208)
10 20 30 40 50 60
pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD
::::::::::::::::::::::::::::::
XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKD
10 20 30
70 80 90 100 110 120
pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
160 170 180 190 200
>>XP_011507755 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa)
initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49
Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208)
10 20 30 40 50 60
pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD
::::::::::::::::::::::::::::::
XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKD
10 20 30
70 80 90 100 110 120
pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
160 170 180 190 200
>>XP_011507756 (OMIM: 600339) PREDICTED: hepatoma-derive (208 aa)
initn: 1387 init1: 1387 opt: 1387 Z-score: 1000.6 bits: 192.3 E(85289): 5.4e-49
Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 208 aa overlap (33-240:1-208)
10 20 30 40 50 60
pF1KE5 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKD
::::::::::::::::::::::::::::::
XP_011 MPEAAVKSTANKYQVFFFGTHETAFLGPKD
10 20 30
70 80 90 100 110 120
pF1KE5 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEGD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEEKEA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHESL
160 170 180 190 200
>>NP_001306115 (OMIM: 600339) hepatoma-derived growth fa (263 aa)
initn: 925 init1: 925 opt: 1389 Z-score: 1000.6 bits: 192.7 E(85289): 5.4e-49
Smith-Waterman score: 1389; 95.9% identity (95.9% similar) in 221 aa overlap (27-240:43-263)
10 20 30 40 50
pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETA
: :::::::::::::::::::::::::::
NP_001 LGHLLATKLKRFLLSKGGRRAQIPDVSRATPHTIDEMPEAAVKSTANKYQVFFFGTHETA
20 30 40 50 60 70
60 70 80 90 100
pF1KE5 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQ-------SSQKKSCV
::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQPVLSLLQSSQKKSCV
80 90 100 110 120 130
110 120 130 140 150 160
pF1KE5 EEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRP
140 150 160 170 180 190
170 180 190 200 210 220
pF1KE5 KEAENPEGEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAENPEGEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDA
200 210 220 230 240 250
230 240
pF1KE5 EAPGIRDHESL
:::::::::::
NP_001 EAPGIRDHESL
260
>>NP_057157 (OMIM: 616643) hepatoma-derived growth facto (203 aa)
initn: 636 init1: 576 opt: 624 Z-score: 462.6 bits: 92.8 E(85289): 5e-19
Smith-Waterman score: 661; 51.5% identity (69.6% similar) in 227 aa overlap (1-225:1-203)
10 20 30 40 50 60
pF1KE5 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP
:.: : .::: ::::::::::::::::::::.::.::: :::: .:::::::::::::
NP_057 MARP-RPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGP
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE
::::::.: :.:::: ::::::.:::::::::: :: .:::. :..: : .:
NP_057 KDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSE--------TE
60 70 80 90 100 110
130 140 150 160 170
pF1KE5 GDGDKKGN-AEGSSDEEGKLVI-DEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGE
:.: :: :..::.::: : : .:.::::.. ::. . : : :.... :.
NP_057 GEG---GNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKS---YTSKKSSKQSRKSPGD
120 130 140 150 160
180 190 200 210 220 230
pF1KE5 EKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHE
: . : :.:.. :: :.. . .. . .. :.:
NP_057 EDDKDCKE---------EENKSSSEGGDAGNDTRNTTSDLQKTSEGT
170 180 190 200
240
pF1KE5 SL
240 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:22:47 2016 done: Tue Nov 8 07:22:48 2016
Total Scan time: 6.310 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]