FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5204, 208 aa
  1>>>pF1KE5204 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4594+/-0.000832; mu= -2.3876+/- 0.051
 mean_var=283.0583+/-55.749, 0's: 0 Z-trim(117.4): 9  B-trim: 0 in 0/54
 Lambda= 0.076232
 statistics sampled from 18087 (18095) to 18087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.556), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS42176.1 NOL3 gene_id:8996|Hs108|chr16          ( 208) 1460 172.4 1.8e-43
CCDS61960.1 NOL3 gene_id:8996|Hs108|chr16          ( 270) 1460 172.5 2.2e-43
CCDS58473.1 NOL3 gene_id:8996|Hs108|chr16          ( 219)  651 83.4 1.2e-16


>>CCDS42176.1 NOL3 gene_id:8996|Hs108|chr16               (208 aa)
 initn: 1460 init1: 1460 opt: 1460  Z-score: 893.8  bits: 172.4 E(32554): 1.8e-43
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
              130       140       150       160       170       180

              190       200        
pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS
       ::::::::::::::::::::::::::::
CCDS42 AEPEPELEPEPDPEPEPDFEERDESEDS
              190       200        

>>CCDS61960.1 NOL3 gene_id:8996|Hs108|chr16               (270 aa)
 initn: 1460 init1: 1460 opt: 1460  Z-score: 892.3  bits: 172.5 E(32554): 2.2e-43
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:63-270)

                                             10        20        30
pF1KE5                               MGNAQERPSETIDRERKRLVETLQADSGLL
                                     ::::::::::::::::::::::::::::::
CCDS61 WRGRRTPSSPCWPPGPVLAEPSGGWDRAPTMGNAQERPSETIDRERKRLVETLQADSGLL
             40        50        60        70        80        90  

               40        50        60        70        80        90
pF1KE5 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA
            100       110       120       130       140       150  

              100       110       120       130       140       150
pF1KE5 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP
            160       170       180       190       200       210  

              160       170       180       190       200        
pF1KE5 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS
            220       230       240       250       260       270

>>CCDS58473.1 NOL3 gene_id:8996|Hs108|chr16               (219 aa)
 initn: 661 init1: 635 opt: 651  Z-score: 412.6  bits: 83.4 E(32554): 1.2e-16
Smith-Waterman score: 651; 73.6% identity (77.8% similar) in 144 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWT-----P
       :::::::::::::::::::::::::::::::::::.  :    .      :.       :
CCDS58 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHA-TGTAAMTLHAQATGRRRHPARGP
               70        80        90        100       110         

         120       130       140       150       160       170     
pF1KE5 EAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPEL
       .:::    :: :   . :    .:                                    
CCDS58 HAPG----CPELQTLTRPGALRAPRRCNPGPRRSQSQSWKLRPLKRLNRSRSQSQSWNPR
     120           130       140       150       160       170     




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:29:36 2016 done: Mon Nov  7 22:29:36 2016
 Total Scan time:  2.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]