FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5203, 220 aa
  1>>>pF1KE5203 220 - 220 aa - 220 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8539+/-0.000353; mu= 11.8042+/- 0.022
 mean_var=82.6482+/-16.102, 0's: 0 Z-trim(115.1): 6  B-trim: 38 in 1/54
 Lambda= 0.141077
 statistics sampled from 25297 (25298) to 25297 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.297), width:  16
 Scan time:  5.430

The best scores are:                                      opt bits E(85289)
NP_006618 (OMIM: 606114) ribonuclease P protein su ( 220) 1426 299.6 2.8e-81


>>NP_006618 (OMIM: 606114) ribonuclease P protein subuni  (220 aa)
 initn: 1426 init1: 1426 opt: 1426  Z-score: 1580.3  bits: 299.6 E(85289): 2.8e-81
Smith-Waterman score: 1426; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE5 MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL
              130       140       150       160       170       180

              190       200       210       220
pF1KE5 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL
       ::::::::::::::::::::::::::::::::::::::::
NP_006 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL
              190       200       210       220




220 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:29:04 2016 done: Mon Nov  7 22:29:05 2016
 Total Scan time:  5.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]