FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5201, 218 aa
  1>>>pF1KE5201 218 - 218 aa - 218 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8332+/-0.000964; mu= 10.2249+/- 0.057
 mean_var=60.3840+/-12.432, 0's: 0 Z-trim(103.6): 18  B-trim: 226 in 1/49
 Lambda= 0.165049
 statistics sampled from 7468 (7475) to 7468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.23), width:  16
 Scan time:  1.370

The best scores are:                                      opt bits E(32554)
CCDS14641.1 HPRT1 gene_id:3251|Hs108|chrX          ( 218) 1448 353.4 6.5e-98
CCDS7145.1 PRTFDC1 gene_id:56952|Hs108|chr10       ( 225) 1009 248.8   2e-66
CCDS60506.1 PRTFDC1 gene_id:56952|Hs108|chr10      ( 190)  781 194.5 3.7e-50


>>CCDS14641.1 HPRT1 gene_id:3251|Hs108|chrX               (218 aa)
 initn: 1448 init1: 1448 opt: 1448  Z-score: 1871.3  bits: 353.4 E(32554): 6.5e-98
Smith-Waterman score: 1448; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KE5 MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVG
              130       140       150       160       170       180

              190       200       210        
pF1KE5 FEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
       ::::::::::::::::::::::::::::::::::::::
CCDS14 FEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
              190       200       210        

>>CCDS7145.1 PRTFDC1 gene_id:56952|Hs108|chr10            (225 aa)
 initn: 1025 init1: 1009 opt: 1009  Z-score: 1306.1  bits: 248.8 E(32554): 2e-66
Smith-Waterman score: 1009; 68.2% identity (88.2% similar) in 211 aa overlap (7-217:14-224)

                      10        20        30        40        50   
pF1KE5        MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDV
                    :::: :: :::::.::  :.::  ::: :.::::.:.:: ::::.:.
CCDS71 MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE5 MKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGD
       ::..:   :..:::::::::: :::....: ..::::: . : ::::::::: :::: :.
CCDS71 MKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGE
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KE5 IKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVG
       ...:::::::::.:::::::::.. ::.::..::: ...:.:.:.:::::::::: :: :
CCDS71 MQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDG
              130       140       150       160       170       180

           180       190       200       210        
pF1KE5 YKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
       ..::..:::::. ::::::::::::::::::.:::.: :: ::. 
CCDS71 FRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV
              190       200       210       220     

>>CCDS60506.1 PRTFDC1 gene_id:56952|Hs108|chr10           (190 aa)
 initn: 781 init1: 781 opt: 781  Z-score: 1014.0  bits: 194.5 E(32554): 3.7e-50
Smith-Waterman score: 781; 66.1% identity (87.1% similar) in 171 aa overlap (7-177:14-184)

                      10        20        30        40        50   
pF1KE5        MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDV
                    :::: :: :::::.::  :.::  ::: :.::::.:.:: ::::.:.
CCDS60 MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE5 MKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGD
       ::..:   :..:::::::::: :::....: ..::::: . : ::::::::: :::: :.
CCDS60 MKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGE
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KE5 IKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVG
       ...:::::::::.:::::::::.. ::.::..::: ...:.:.:.:::::::::: :: :
CCDS60 MQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDG
              130       140       150       160       170       180

           180       190       200       210        
pF1KE5 YKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
       ..::                                         
CCDS60 FRPDSHMRHQ                                   
              190                                   




218 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:27:48 2016 done: Mon Nov  7 22:27:48 2016
 Total Scan time:  1.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]