Result of FASTA (omim) for
pFN21AE5194
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5194, 154 aa
1>>>pF1KE5194 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1202+/-0.000312; mu= 12.3540+/- 0.019
mean_var=55.8706+/-11.041, 0's: 0 Z-trim(114.9): 13 B-trim: 75 in 1/52
Lambda= 0.171586
statistics sampled from 25074 (25083) to 25074 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.294), width: 16
Scan time: 4.850
The best scores are: opt bits E(85289)
NP_001961 (OMIM: 600187) eukaryotic translation in ( 154) 992 253.3 1.2e-67
NP_001137233 (OMIM: 600187) eukaryotic translation ( 154) 992 253.3 1.2e-67
NP_001137234 (OMIM: 600187) eukaryotic translation ( 154) 992 253.3 1.2e-67
XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic ( 154) 992 253.3 1.2e-67
NP_001137232 (OMIM: 600187) eukaryotic translation ( 184) 992 253.3 1.4e-67
NP_065123 (OMIM: 605782) eukaryotic translation in ( 153) 840 215.6 2.5e-56
>>NP_001961 (OMIM: 600187) eukaryotic translation initia (154 aa)
initn: 992 init1: 992 opt: 992 Z-score: 1335.7 bits: 253.3 E(85289): 1.2e-67
Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::: ::::::::.:::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
::::::::::::::::::::::::::::::::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001137233 (OMIM: 600187) eukaryotic translation ini (154 aa)
initn: 992 init1: 992 opt: 992 Z-score: 1335.7 bits: 253.3 E(85289): 1.2e-67
Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::: ::::::::.:::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
::::::::::::::::::::::::::::::::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001137234 (OMIM: 600187) eukaryotic translation ini (154 aa)
initn: 992 init1: 992 opt: 992 Z-score: 1335.7 bits: 253.3 E(85289): 1.2e-67
Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::: ::::::::.:::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
::::::::::::::::::::::::::::::::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic tran (154 aa)
initn: 992 init1: 992 opt: 992 Z-score: 1335.7 bits: 253.3 E(85289): 1.2e-67
Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::: ::::::::.:::::::::::::::
XP_005 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_005 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
::::::::::::::::::::::::::::::::::
XP_005 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001137232 (OMIM: 600187) eukaryotic translation ini (184 aa)
initn: 992 init1: 992 opt: 992 Z-score: 1334.4 bits: 253.3 E(85289): 1.4e-67
Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:31-184)
10 20 30
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGF
::::::::::::::::::::::::::::::
NP_001 MCGTGGTDSKTRRPPHRASFLKRLESKPLKMADDLDFETGDAGASATFPMQCSALRKNGF
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE5 VVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
::::: ::::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE5 LIGIQDGYLSLLQDSGEVPEDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_001 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK
130 140 150 160 170 180
pF1KE5 AMAK
::::
NP_001 AMAK
>>NP_065123 (OMIM: 605782) eukaryotic translation initia (153 aa)
initn: 840 init1: 840 opt: 840 Z-score: 1132.4 bits: 215.6 E(85289): 2.5e-56
Smith-Waterman score: 840; 82.0% identity (93.3% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
:::..:: :::::::.:.::::::::::::::::: ::::::::.:::::::::::::::
NP_065 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
::::::::::::::::::::::::::::.::: ::::::::: ..::: :::.::::.::
NP_065 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
:::: ::. ::.. ..:. ::.:: :::::
NP_065 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
130 140 150
154 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:21:45 2016 done: Tue Nov 8 07:21:45 2016
Total Scan time: 4.850 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]