FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5194, 154 aa
  1>>>pF1KE5194 154 - 154 aa - 154 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4688+/-0.000696; mu= 10.2155+/- 0.042
 mean_var=53.6940+/-10.384, 0's: 0 Z-trim(108.3): 15  B-trim: 10 in 1/50
 Lambda= 0.175029
 statistics sampled from 10105 (10111) to 10105 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.311), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS53546.1 EIF5AL1 gene_id:143244|Hs108|chr10     ( 154) 1028 267.1   3e-72
CCDS11099.1 EIF5A gene_id:1984|Hs108|chr17         ( 154)  992 258.0 1.7e-69
CCDS45601.1 EIF5A gene_id:1984|Hs108|chr17         ( 184)  992 258.0   2e-69
CCDS3214.1 EIF5A2 gene_id:56648|Hs108|chr3         ( 153)  840 219.6 5.9e-58


>>CCDS53546.1 EIF5AL1 gene_id:143244|Hs108|chr10          (154 aa)
 initn: 1028 init1: 1028 opt: 1028  Z-score: 1410.5  bits: 267.1 E(32554): 3e-72
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
               70        80        90       100       110       120

              130       140       150    
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
       ::::::::::::::::::::::::::::::::::
CCDS53 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
              130       140       150    

>>CCDS11099.1 EIF5A gene_id:1984|Hs108|chr17              (154 aa)
 initn: 992 init1: 992 opt: 992  Z-score: 1361.4  bits: 258.0 E(32554): 1.7e-69
Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
       ::::::::::::::::::::::::::::::::::: ::::::::.:::::::::::::::
CCDS11 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS11 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
               70        80        90       100       110       120

              130       140       150    
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
       ::::::::::::::::::::::::::::::::::
CCDS11 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
              130       140       150    

>>CCDS45601.1 EIF5A gene_id:1984|Hs108|chr17              (184 aa)
 initn: 992 init1: 992 opt: 992  Z-score: 1360.0  bits: 258.0 E(32554): 2e-69
Smith-Waterman score: 992; 98.1% identity (98.7% similar) in 154 aa overlap (1-154:31-184)

                                             10        20        30
pF1KE5                               MADDLDFETGDAGASATFPMQCSALRKNGF
                                     ::::::::::::::::::::::::::::::
CCDS45 MCGTGGTDSKTRRPPHRASFLKRLESKPLKMADDLDFETGDAGASATFPMQCSALRKNGF
               10        20        30        40        50        60

               40        50        60        70        80        90
pF1KE5 VVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
       ::::: ::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
               70        80        90       100       110       120

              100       110       120       130       140       150
pF1KE5 LIGIQDGYLSLLQDSGEVPEDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS45 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK
              130       140       150       160       170       180

           
pF1KE5 AMAK
       ::::
CCDS45 AMAK
           

>>CCDS3214.1 EIF5A2 gene_id:56648|Hs108|chr3              (153 aa)
 initn: 840 init1: 840 opt: 840  Z-score: 1154.0  bits: 219.6 E(32554): 5.9e-58
Smith-Waterman score: 840; 82.0% identity (93.3% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
       :::..:: :::::::.:.::::::::::::::::: ::::::::.:::::::::::::::
CCDS32 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
       ::::::::::::::::::::::::::::.::: ::::::::: ..::: :::.::::.::
CCDS32 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
               70        80        90       100       110       120

              130       140       150    
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
       :::: ::. ::.. ..:. ::.:: :::::    
CCDS32 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK 
              130       140       150    




154 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:21:44 2016 done: Tue Nov  8 07:21:44 2016
 Total Scan time:  1.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]