FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5190, 132 aa
  1>>>pF1KE5190 132 - 132 aa - 132 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0045+/-0.00059; mu= 12.4298+/- 0.036
 mean_var=57.9854+/-11.146, 0's: 0 Z-trim(111.0): 7  B-trim: 2 in 1/50
 Lambda= 0.168428
 statistics sampled from 12052 (12055) to 12052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.37), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS6872.1 RPL12 gene_id:6136|Hs108|chr9           ( 165)  620 158.1 1.8e-39


>>CCDS6872.1 RPL12 gene_id:6136|Hs108|chr9                (165 aa)
 initn: 859 init1: 620 opt: 620  Z-score: 822.1  bits: 158.1 E(32554): 1.8e-39
Smith-Waterman score: 790; 79.9% identity (79.9% similar) in 164 aa overlap (2-132:2-165)

               10        20        30                              
pF1KE5 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGL-----------------------
        ::::::::::::::::::::::::::::::::::::                       
CCDS68 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV
               10        20        30        40        50        60

                  40        50        60        70        80       
pF1KE5 ----------IEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS
               70        80        90       100       110       120

        90       100       110       120       130  
pF1KE5 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
              130       140       150       160     




132 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:26:05 2016 done: Mon Nov  7 22:26:05 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]