Result of FASTA (ccds) for
pFN21AE5189
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5189, 147 aa
1>>>pF1KE5189 147 - 147 aa - 147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2684+/-0.000629; mu= 11.9003+/- 0.038
mean_var=63.7092+/-12.500, 0's: 0 Z-trim(111.0): 31 B-trim: 0 in 0/54
Lambda= 0.160684
statistics sampled from 11973 (12004) to 11973 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.369), width: 16
Scan time: 1.560
The best scores are: opt bits E(32554)
CCDS55014.1 VEGFA gene_id:7422|Hs108|chr6 ( 147) 1079 257.9 1.6e-69
CCDS47434.1 VEGFA gene_id:7422|Hs108|chr6 ( 327) 1079 258.1 3.1e-69
CCDS55008.1 VEGFA gene_id:7422|Hs108|chr6 ( 209) 1028 246.2 7.7e-66
CCDS55009.1 VEGFA gene_id:7422|Hs108|chr6 ( 215) 1028 246.2 7.9e-66
CCDS55010.1 VEGFA gene_id:7422|Hs108|chr6 ( 232) 1028 246.2 8.4e-66
CCDS55011.1 VEGFA gene_id:7422|Hs108|chr6 ( 174) 1025 245.5 1.1e-65
CCDS55012.1 VEGFA gene_id:7422|Hs108|chr6 ( 191) 1025 245.5 1.2e-65
CCDS55013.1 VEGFA gene_id:7422|Hs108|chr6 ( 191) 1025 245.5 1.2e-65
CCDS47433.1 VEGFA gene_id:7422|Hs108|chr6 ( 389) 1028 246.3 1.3e-65
CCDS4907.2 VEGFA gene_id:7422|Hs108|chr6 ( 395) 1028 246.3 1.3e-65
CCDS34457.1 VEGFA gene_id:7422|Hs108|chr6 ( 412) 1028 246.4 1.4e-65
CCDS47435.1 VEGFA gene_id:7422|Hs108|chr6 ( 354) 1025 245.6 1.9e-65
CCDS34458.1 VEGFA gene_id:7422|Hs108|chr6 ( 371) 1025 245.6 2e-65
CCDS47432.1 VEGFA gene_id:7422|Hs108|chr6 ( 371) 1025 245.6 2e-65
CCDS55015.1 VEGFA gene_id:7422|Hs108|chr6 ( 137) 967 232.0 9.7e-62
CCDS55007.1 VEGFA gene_id:7422|Hs108|chr6 ( 317) 967 232.2 2e-61
CCDS69125.1 VEGFA gene_id:7422|Hs108|chr6 ( 163) 822 198.4 1.5e-51
CCDS55932.1 PGF gene_id:5228|Hs108|chr14 ( 149) 456 113.5 4.8e-26
CCDS9835.1 PGF gene_id:5228|Hs108|chr14 ( 170) 437 109.2 1.1e-24
CCDS73664.1 PGF gene_id:5228|Hs108|chr14 ( 169) 436 108.9 1.3e-24
CCDS58144.1 VEGFB gene_id:7423|Hs108|chr11 ( 188) 373 94.3 3.6e-20
CCDS8062.1 VEGFB gene_id:7423|Hs108|chr11 ( 207) 364 92.3 1.7e-19
CCDS43285.1 VEGFC gene_id:7424|Hs108|chr4 ( 419) 265 69.5 2.4e-12
>>CCDS55014.1 VEGFA gene_id:7422|Hs108|chr6 (147 aa)
initn: 1079 init1: 1079 opt: 1079 Z-score: 1361.8 bits: 257.9 E(32554): 1.6e-69
Smith-Waterman score: 1079; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140
pF1KE5 SFLQHNKCECRPKKDRARQEKCDKPRR
:::::::::::::::::::::::::::
CCDS55 SFLQHNKCECRPKKDRARQEKCDKPRR
130 140
>>CCDS47434.1 VEGFA gene_id:7422|Hs108|chr6 (327 aa)
initn: 1079 init1: 1079 opt: 1079 Z-score: 1356.5 bits: 258.1 E(32554): 3.1e-69
Smith-Waterman score: 1079; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:181-327)
10 20 30
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMA
::::::::::::::::::::::::::::::
CCDS47 RRGAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMA
160 170 180 190 200 210
40 50 60 70 80 90
pF1KE5 EGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDE
220 230 240 250 260 270
100 110 120 130 140
pF1KE5 GLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQEKCDKPRR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQEKCDKPRR
280 290 300 310 320
>>CCDS55008.1 VEGFA gene_id:7422|Hs108|chr6 (209 aa)
initn: 1028 init1: 1028 opt: 1028 Z-score: 1295.5 bits: 246.2 E(32554): 7.7e-66
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140
pF1KE5 SFLQHNKCECRPKKDRARQEKCDKPRR
:::::::::::::::::::::
CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRPCGPCSERRKHLFVQDPQTCK
130 140 150 160 170 180
>>CCDS55009.1 VEGFA gene_id:7422|Hs108|chr6 (215 aa)
initn: 1028 init1: 1028 opt: 1028 Z-score: 1295.3 bits: 246.2 E(32554): 7.9e-66
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140
pF1KE5 SFLQHNKCECRPKKDRARQEKCDKPRR
:::::::::::::::::::::
CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERRKHLFVQ
130 140 150 160 170 180
>>CCDS55010.1 VEGFA gene_id:7422|Hs108|chr6 (232 aa)
initn: 1028 init1: 1028 opt: 1028 Z-score: 1294.8 bits: 246.2 E(32554): 8.4e-66
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140
pF1KE5 SFLQHNKCECRPKKDRARQEKCDKPRR
:::::::::::::::::::::
CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLMPWSLPG
130 140 150 160 170 180
>>CCDS55011.1 VEGFA gene_id:7422|Hs108|chr6 (174 aa)
initn: 1022 init1: 1022 opt: 1025 Z-score: 1293.0 bits: 245.5 E(32554): 1.1e-65
Smith-Waterman score: 1025; 94.0% identity (96.7% similar) in 151 aa overlap (1-147:1-151)
10 20 30 40 50 60
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140
pF1KE5 SFLQHNKCECRPKKDRARQEK----CDKPRR
::::::::::::::::::::. :.. :.
CCDS55 SFLQHNKCECRPKKDRARQENPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKM
130 140 150 160 170
>>CCDS55012.1 VEGFA gene_id:7422|Hs108|chr6 (191 aa)
initn: 1022 init1: 1022 opt: 1025 Z-score: 1292.4 bits: 245.5 E(32554): 1.2e-65
Smith-Waterman score: 1025; 94.0% identity (96.7% similar) in 151 aa overlap (1-147:1-151)
10 20 30 40 50 60
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140
pF1KE5 SFLQHNKCECRPKKDRARQEK----CDKPRR
::::::::::::::::::::. :.. :.
CCDS55 SFLQHNKCECRPKKDRARQENPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELN
130 140 150 160 170 180
CCDS55 ERTCRCDKPRR
190
>>CCDS55013.1 VEGFA gene_id:7422|Hs108|chr6 (191 aa)
initn: 1022 init1: 1022 opt: 1025 Z-score: 1292.4 bits: 245.5 E(32554): 1.2e-65
Smith-Waterman score: 1025; 94.0% identity (96.7% similar) in 151 aa overlap (1-147:1-151)
10 20 30 40 50 60
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
70 80 90 100 110 120
130 140
pF1KE5 SFLQHNKCECRPKKDRARQEK----CDKPRR
::::::::::::::::::::. :.. :.
CCDS55 SFLQHNKCECRPKKDRARQENPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELN
130 140 150 160 170 180
CCDS55 ERTCRSLTRKD
190
>>CCDS47433.1 VEGFA gene_id:7422|Hs108|chr6 (389 aa)
initn: 1028 init1: 1028 opt: 1028 Z-score: 1291.4 bits: 246.3 E(32554): 1.3e-65
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:181-321)
10 20 30
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMA
::::::::::::::::::::::::::::::
CCDS47 RRGAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMA
160 170 180 190 200 210
40 50 60 70 80 90
pF1KE5 EGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDE
220 230 240 250 260 270
100 110 120 130 140
pF1KE5 GLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQEKCDKPRR
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKG
280 290 300 310 320 330
CCDS47 QKRKRKKSRPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
340 350 360 370 380
>>CCDS4907.2 VEGFA gene_id:7422|Hs108|chr6 (395 aa)
initn: 1028 init1: 1028 opt: 1028 Z-score: 1291.3 bits: 246.3 E(32554): 1.3e-65
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:181-321)
10 20 30
pF1KE5 MNFLLSWVHWSLALLLYLHHAKWSQAAPMA
::::::::::::::::::::::::::::::
CCDS49 RRGAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMA
160 170 180 190 200 210
40 50 60 70 80 90
pF1KE5 EGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 EGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDE
220 230 240 250 260 270
100 110 120 130 140
pF1KE5 GLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQEKCDKPRR
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 GLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKG
280 290 300 310 320 330
CCDS49 QKRKRKKSRYKSWSVPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC
340 350 360 370 380 390
147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:25:28 2016 done: Mon Nov 7 22:25:29 2016
Total Scan time: 1.560 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]