FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5186, 79 aa
  1>>>pF1KE5186 79 - 79 aa - 79 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6340+/-0.000504; mu= 10.5049+/- 0.030
 mean_var=46.1931+/- 9.222, 0's: 0 Z-trim(112.5): 12  B-trim: 0 in 0/49
 Lambda= 0.188706
 statistics sampled from 13249 (13261) to 13249 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.407), width:  16
 Scan time:  1.370

The best scores are:                                      opt bits E(32554)
CCDS11573.1 LUC7L3 gene_id:51747|Hs108|chr17       ( 432)  385 111.5 3.1e-25
CCDS82158.1 LUC7L3 gene_id:51747|Hs108|chr17       ( 489)  385 111.5 3.4e-25


>>CCDS11573.1 LUC7L3 gene_id:51747|Hs108|chr17            (432 aa)
 initn: 385 init1: 385 opt: 385  Z-score: 566.6  bits: 111.5 E(32554): 3.1e-25
Smith-Waterman score: 385; 100.0% identity (100.0% similar) in 55 aa overlap (1-55:1-55)

               10        20        30        40        50        60
pF1KE5 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLDVFGR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS11 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
               10        20        30        40        50        60

               70                                                  
pF1KE5 GDNISDVSKFLEDDKWMEE                                         
                                                                   
CCDS11 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
               70        80        90       100       110       120

>>CCDS82158.1 LUC7L3 gene_id:51747|Hs108|chr17            (489 aa)
 initn: 385 init1: 385 opt: 385  Z-score: 565.8  bits: 111.5 E(32554): 3.4e-25
Smith-Waterman score: 385; 100.0% identity (100.0% similar) in 55 aa overlap (1-55:1-55)

               10        20        30        40        50        60
pF1KE5 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLDVFGR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS82 MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK
               10        20        30        40        50        60

               70                                                  
pF1KE5 GDNISDVSKFLEDDKWMEE                                         
                                                                   
CCDS82 IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG
               70        80        90       100       110       120




79 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:23:52 2016 done: Mon Nov  7 22:23:52 2016
 Total Scan time:  1.370 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]