Result of FASTA (ccds) for
pFN21AE5184
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5184, 72 aa
1>>>pF1KE5184 72 - 72 aa - 72 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8351+/-0.000611; mu= 8.0382+/- 0.037
mean_var=40.3399+/- 8.098, 0's: 0 Z-trim(107.9): 14 B-trim: 0 in 0/51
Lambda= 0.201933
statistics sampled from 9835 (9847) to 9835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.302), width: 16
Scan time: 1.270
The best scores are: opt bits E(32554)
CCDS73496.1 BEST3 gene_id:144453|Hs108|chr12 ( 72) 460 140.5 8.3e-35
CCDS61193.1 BEST3 gene_id:144453|Hs108|chr12 ( 398) 340 105.6 1.5e-23
CCDS61192.1 BEST3 gene_id:144453|Hs108|chr12 ( 562) 340 105.7 2.1e-23
CCDS8992.2 BEST3 gene_id:144453|Hs108|chr12 ( 668) 340 105.7 2.4e-23
CCDS514.1 BEST4 gene_id:266675|Hs108|chr1 ( 473) 248 78.8 2e-15
CCDS42506.1 BEST2 gene_id:54831|Hs108|chr19 ( 509) 248 78.8 2.2e-15
CCDS31580.1 BEST1 gene_id:7439|Hs108|chr11 ( 585) 232 74.2 6.4e-14
CCDS44623.1 BEST1 gene_id:7439|Hs108|chr11 ( 604) 232 74.2 6.6e-14
>>CCDS73496.1 BEST3 gene_id:144453|Hs108|chr12 (72 aa)
initn: 460 init1: 460 opt: 460 Z-score: 738.4 bits: 140.5 E(32554): 8.3e-35
Smith-Waterman score: 460; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)
10 20 30 40 50 60
pF1KE5 MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAERTGMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAERTGMK
10 20 30 40 50 60
70
pF1KE5 PILPSSFEMQSF
::::::::::::
CCDS73 PILPSSFEMQSF
70
>>CCDS61193.1 BEST3 gene_id:144453|Hs108|chr12 (398 aa)
initn: 340 init1: 340 opt: 340 Z-score: 536.4 bits: 105.6 E(32554): 1.5e-23
Smith-Waterman score: 340; 100.0% identity (100.0% similar) in 54 aa overlap (1-54:107-160)
10 20 30
pF1KE5 MFLISSSVHGSDEHGRLLRRTLMRYVNLTS
::::::::::::::::::::::::::::::
CCDS61 PVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEHGRLLRRTLMRYVNLTS
80 90 100 110 120 130
40 50 60 70
pF1KE5 LLIFRSVSTAVYKRFPTMDHVVEAERTGMKPILPSSFEMQSF
::::::::::::::::::::::::
CCDS61 LLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLKYWVPFIWFGNLATKAR
140 150 160 170 180 190
>>CCDS61192.1 BEST3 gene_id:144453|Hs108|chr12 (562 aa)
initn: 340 init1: 340 opt: 340 Z-score: 533.8 bits: 105.7 E(32554): 2.1e-23
Smith-Waterman score: 340; 100.0% identity (100.0% similar) in 54 aa overlap (1-54:1-54)
10 20 30 40 50 60
pF1KE5 MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAERTGMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MFLISSSVHGSDEHGRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTD
10 20 30 40 50 60
70
pF1KE5 PILPSSFEMQSF
CCDS61 ERKLFNHLKSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFG
70 80 90 100 110 120
>>CCDS8992.2 BEST3 gene_id:144453|Hs108|chr12 (668 aa)
initn: 340 init1: 340 opt: 340 Z-score: 532.5 bits: 105.7 E(32554): 2.4e-23
Smith-Waterman score: 340; 100.0% identity (100.0% similar) in 54 aa overlap (1-54:107-160)
10 20 30
pF1KE5 MFLISSSVHGSDEHGRLLRRTLMRYVNLTS
::::::::::::::::::::::::::::::
CCDS89 PVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEHGRLLRRTLMRYVNLTS
80 90 100 110 120 130
40 50 60 70
pF1KE5 LLIFRSVSTAVYKRFPTMDHVVEAERTGMKPILPSSFEMQSF
::::::::::::::::::::::::
CCDS89 LLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLKYWVPFIWFGNLATKAR
140 150 160 170 180 190
>>CCDS514.1 BEST4 gene_id:266675|Hs108|chr1 (473 aa)
initn: 258 init1: 242 opt: 248 Z-score: 390.2 bits: 78.8 E(32554): 2e-15
Smith-Waterman score: 248; 70.4% identity (92.6% similar) in 54 aa overlap (1-54:107-160)
10 20 30
pF1KE5 MFLISSSVHGSDEHGRLLRRTLMRYVNLTS
: .::.:::: :..::::::::.::.::.:
CCDS51 PLSFVLGFYVTLVVNRWWSQYTSIPLPDQLMCVISASVHGVDQRGRLLRRTLIRYANLAS
80 90 100 110 120 130
40 50 60 70
pF1KE5 LLIFRSVSTAVYKRFPTMDHVVEAERTGMKPILPSSFEMQSF
.:..::::: : ::::::.:::.:
CCDS51 VLVLRSVSTRVLKRFPTMEHVVDAGFMSQEERKKFESLKSDFNKYWVPCVWFTNLAAQAR
140 150 160 170 180 190
>>CCDS42506.1 BEST2 gene_id:54831|Hs108|chr19 (509 aa)
initn: 248 init1: 248 opt: 248 Z-score: 389.7 bits: 78.8 E(32554): 2.2e-15
Smith-Waterman score: 248; 66.7% identity (94.4% similar) in 54 aa overlap (1-54:107-160)
10 20 30
pF1KE5 MFLISSSVHGSDEHGRLLRRTLMRYVNLTS
: .....::: :..::: :::::::..:..
CCDS42 PVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDRGRLYRRTLMRYAGLSA
80 90 100 110 120 130
40 50 60 70
pF1KE5 LLIFRSVSTAVYKRFPTMDHVVEAERTGMKPILPSSFEMQSF
.::.:::::::.:::::.::::::
CCDS42 VLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFSNLAAQAR
140 150 160 170 180 190
>>CCDS31580.1 BEST1 gene_id:7439|Hs108|chr11 (585 aa)
initn: 204 init1: 204 opt: 232 Z-score: 363.4 bits: 74.2 E(32554): 6.4e-14
Smith-Waterman score: 232; 66.7% identity (92.6% similar) in 54 aa overlap (1-54:107-160)
10 20 30
pF1KE5 MFLISSSVHGSDEHGRLLRRTLMRYVNLTS
: :.:. :.:.::.::::::::.::.:: .
CCDS31 PISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQGRLLRRTLIRYANLGN
80 90 100 110 120 130
40 50 60 70
pF1KE5 LLIFRSVSTAVYKRFPTMDHVVEAERTGMKPILPSSFEMQSF
.::.::::::::::::. .:.:.:
CCDS31 VLILRSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHNMFWVPWVWFANLSMKAW
140 150 160 170 180 190
>>CCDS44623.1 BEST1 gene_id:7439|Hs108|chr11 (604 aa)
initn: 204 init1: 204 opt: 232 Z-score: 363.2 bits: 74.2 E(32554): 6.6e-14
Smith-Waterman score: 232; 66.7% identity (92.6% similar) in 54 aa overlap (1-54:47-100)
10 20 30
pF1KE5 MFLISSSVHGSDEHGRLLRRTLMRYVNLTS
: :.:. :.:.::.::::::::.::.:: .
CCDS44 PISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQGRLLRRTLIRYANLGN
20 30 40 50 60 70
40 50 60 70
pF1KE5 LLIFRSVSTAVYKRFPTMDHVVEAERTGMKPILPSSFEMQSF
.::.::::::::::::. .:.:.:
CCDS44 VLILRSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHNMFWVPWVWFANLSMKAW
80 90 100 110 120 130
72 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:22:49 2016 done: Mon Nov 7 22:22:50 2016
Total Scan time: 1.270 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]