FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5181, 114 aa
  1>>>pF1KE5181 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9087+/-0.000817; mu= 11.4048+/- 0.048
 mean_var=49.3093+/- 9.592, 0's: 0 Z-trim(104.4): 45  B-trim: 74 in 1/50
 Lambda= 0.182646
 statistics sampled from 7857 (7902) to 7857 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS1274.1 XCL1 gene_id:6375|Hs108|chr1            ( 114)  714 195.6 5.8e-51
CCDS1273.1 XCL2 gene_id:6846|Hs108|chr1            ( 114)  702 192.4 5.1e-50


>>CCDS1274.1 XCL1 gene_id:6375|Hs108|chr1                 (114 aa)
 initn: 714 init1: 714 opt: 714  Z-score: 1028.5  bits: 195.6 E(32554): 5.8e-51
Smith-Waterman score: 714; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE5 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
               70        80        90       100       110    

>>CCDS1273.1 XCL2 gene_id:6846|Hs108|chr1                 (114 aa)
 initn: 702 init1: 702 opt: 702  Z-score: 1011.4  bits: 192.4 E(32554): 5.1e-50
Smith-Waterman score: 702; 98.2% identity (99.1% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE5 MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
       ::::::::::::::::::::::::::: .:::::::::::::::::::::::::::::::
CCDS12 MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIF
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE5 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG
               70        80        90       100       110    




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:21:10 2016 done: Mon Nov  7 22:21:10 2016
 Total Scan time:  1.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]