FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5179, 110 aa
  1>>>pF1KE5179 110 - 110 aa - 110 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5303+/-0.000332; mu= 13.2845+/- 0.020
 mean_var=49.6009+/-10.154, 0's: 0 Z-trim(113.2): 10  B-trim: 632 in 1/56
 Lambda= 0.182108
 statistics sampled from 22447 (22449) to 22447 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.263), width:  16
 Scan time:  3.920

The best scores are:                                      opt bits E(85289)
NP_000987 (OMIM: 180468,612528) 60S ribosomal prot ( 110)  737 200.9 3.5e-52
NP_001303240 (OMIM: 180468,612528) 60S ribosomal p ( 110)  737 200.9 3.5e-52


>>NP_000987 (OMIM: 180468,612528) 60S ribosomal protein   (110 aa)
 initn: 737 init1: 737 opt: 737  Z-score: 1057.8  bits: 200.9 E(85289): 3.5e-52
Smith-Waterman score: 737; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE5 MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTP
               10        20        30        40        50        60

               70        80        90       100       110
pF1KE5 GGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI
               70        80        90       100       110

>>NP_001303240 (OMIM: 180468,612528) 60S ribosomal prote  (110 aa)
 initn: 737 init1: 737 opt: 737  Z-score: 1057.8  bits: 200.9 E(85289): 3.5e-52
Smith-Waterman score: 737; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE5 MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTP
               10        20        30        40        50        60

               70        80        90       100       110
pF1KE5 GGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI
               70        80        90       100       110




110 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:20:12 2016 done: Mon Nov  7 22:20:13 2016
 Total Scan time:  3.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]