Result of FASTA (omim) for
pFN21AE5178
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5178, 153 aa
1>>>pF1KE5178 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1372+/-0.00028; mu= 13.0705+/- 0.018
mean_var=60.5020+/-12.109, 0's: 0 Z-trim(119.0): 30 B-trim: 1259 in 1/55
Lambda= 0.164888
statistics sampled from 32493 (32524) to 32493 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.381), width: 16
Scan time: 5.130
The best scores are: opt bits E(85289)
NP_066957 (OMIM: 600789) 39S ribosomal protein L23 ( 153) 1042 255.4 2.7e-68
XP_011518578 (OMIM: 600789) PREDICTED: 39S ribosom ( 191) 675 168.1 6.2e-42
XP_011518577 (OMIM: 600789) PREDICTED: 39S ribosom ( 234) 675 168.1 7.4e-42
XP_011518575 (OMIM: 600789) PREDICTED: 39S ribosom ( 241) 675 168.2 7.6e-42
XP_006718334 (OMIM: 600789) PREDICTED: 39S ribosom ( 123) 663 165.2 3.1e-41
>>NP_066957 (OMIM: 600789) 39S ribosomal protein L23, mi (153 aa)
initn: 1042 init1: 1042 opt: 1042 Z-score: 1347.1 bits: 255.4 E(85289): 2.7e-68
Smith-Waterman score: 1042; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
70 80 90 100 110 120
130 140 150
pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
:::::::::::::::::::::::::::::::::
NP_066 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
130 140 150
>>XP_011518578 (OMIM: 600789) PREDICTED: 39S ribosomal p (191 aa)
initn: 662 init1: 662 opt: 675 Z-score: 873.8 bits: 168.1 E(85289): 6.2e-42
Smith-Waterman score: 680; 73.3% identity (80.7% similar) in 150 aa overlap (1-150:1-137)
10 20 30 40 50 60
pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
::::::::::::::::::::::::::::::::::::::: :. : :... .:
XP_011 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQL--------PSQTPSKEQNGQG
70 80 90 100 110
130 140 150
pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
:. . : . . . ::: :.:
XP_011 STLC-FRSSCSKGWSTWGTRDPR----PAWSPVGGRIPRKAGSGGPANRIAQDGRLLLKN
120 130 140 150 160
>>XP_011518577 (OMIM: 600789) PREDICTED: 39S ribosomal p (234 aa)
initn: 662 init1: 662 opt: 675 Z-score: 872.5 bits: 168.1 E(85289): 7.4e-42
Smith-Waterman score: 680; 73.3% identity (80.7% similar) in 150 aa overlap (1-150:1-137)
10 20 30 40 50 60
pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
::::::::::::::::::::::::::::::::::::::: :. : :... .:
XP_011 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQL--------PSQTPSKEQNGQG
70 80 90 100 110
130 140 150
pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
:. . : . . . ::: :.:
XP_011 STLC-FRSSCSKGWSTWGTRDPR----PAWSPVGGRIPRKAGSGGPANRIAQDGRLLLNS
120 130 140 150 160
>>XP_011518575 (OMIM: 600789) PREDICTED: 39S ribosomal p (241 aa)
initn: 662 init1: 662 opt: 675 Z-score: 872.3 bits: 168.2 E(85289): 7.6e-42
Smith-Waterman score: 680; 73.3% identity (80.7% similar) in 150 aa overlap (1-150:1-137)
10 20 30 40 50 60
pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
::::::::::::::::::::::::::::::::::::::: :. : :... .:
XP_011 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQL--------PSQTPSKEQNGQG
70 80 90 100 110
130 140 150
pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
:. . : . . . ::: :.:
XP_011 STLC-FRSSCSKGWSTWGTRDPR----PAWSPVGGRIPRKAGSGGPANRIAQDGRLLLNS
120 130 140 150 160
>>XP_006718334 (OMIM: 600789) PREDICTED: 39S ribosomal p (123 aa)
initn: 663 init1: 663 opt: 663 Z-score: 861.3 bits: 165.2 E(85289): 3.1e-41
Smith-Waterman score: 663; 94.3% identity (97.1% similar) in 105 aa overlap (1-105:1-105)
10 20 30 40 50 60
pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
:::::::::::::::::::::::::::::::::::::::. . .
XP_006 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLVPKEQYPLLLVNPSHMLWPGL
70 80 90 100 110 120
130 140 150
pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
XP_006 GLG
153 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:19:31 2016 done: Mon Nov 7 22:19:32 2016
Total Scan time: 5.130 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]