FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5178, 153 aa
  1>>>pF1KE5178 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3032+/-0.000626; mu= 12.0768+/- 0.038
 mean_var=60.7754+/-12.175, 0's: 0 Z-trim(111.6): 7  B-trim: 393 in 1/50
 Lambda= 0.164517
 statistics sampled from 12484 (12487) to 12484 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.384), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS31336.1 MRPL23 gene_id:6150|Hs108|chr11        ( 153) 1042 254.8 1.5e-68


>>CCDS31336.1 MRPL23 gene_id:6150|Hs108|chr11             (153 aa)
 initn: 1042 init1: 1042 opt: 1042  Z-score: 1344.4  bits: 254.8 E(32554): 1.5e-68
Smith-Waterman score: 1042; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG
               70        80        90       100       110       120

              130       140       150   
pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
       :::::::::::::::::::::::::::::::::
CCDS31 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL
              130       140       150   




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:19:30 2016 done: Mon Nov  7 22:19:31 2016
 Total Scan time:  1.840 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]