FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5174, 166 aa
  1>>>pF1KE5174 166 - 166 aa - 166 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4736+/-0.000268; mu= 3.4244+/- 0.017
 mean_var=131.9129+/-26.359, 0's: 0 Z-trim(123.4): 1  B-trim: 0 in 0/50
 Lambda= 0.111668
 statistics sampled from 43275 (43276) to 43275 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.507), width:  16
 Scan time:  5.120

The best scores are:                                      opt bits E(85289)
NP_004918 (OMIM: 606866) 39S ribosomal protein L49 ( 166) 1171 198.5 4.1e-51


>>NP_004918 (OMIM: 606866) 39S ribosomal protein L49, mi  (166 aa)
 initn: 1171 init1: 1171 opt: 1171  Z-score: 1038.6  bits: 198.5 E(85289): 4.1e-51
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE5 MAATMFRATLRGWRTGVQRGCGLRLLSQTQGPPDYPRFVESVDEYQFVERLLPATRIPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAATMFRATLRGWRTGVQRGCGLRLLSQTQGPPDYPRFVESVDEYQFVERLLPATRIPDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PKHEHYPTPSGWQPPRDPPPNLPYFVRRSRMHNIPVYKDITHGNRQMTVIRKVEGDIWAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PKHEHYPTPSGWQPPRDPPPNLPYFVRRSRMHNIPVYKDITHGNRQMTVIRKVEGDIWAL
               70        80        90       100       110       120

              130       140       150       160      
pF1KE5 QKDVEDFLSPLLGKTPVTQVNEVTGTLRIKGYFDQELKAWLLEKGF
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QKDVEDFLSPLLGKTPVTQVNEVTGTLRIKGYFDQELKAWLLEKGF
              130       140       150       160      




166 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:17:50 2016 done: Mon Nov  7 22:17:51 2016
 Total Scan time:  5.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]