Result of FASTA (omim) for
pFN21AE5173
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5173, 169 aa
1>>>pF1KE5173 169 - 169 aa - 169 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7473+/-0.000346; mu= 15.1093+/- 0.021
mean_var=58.1962+/-11.708, 0's: 0 Z-trim(113.5): 36 B-trim: 50 in 1/49
Lambda= 0.168123
statistics sampled from 22896 (22911) to 22896 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.269), width: 16
Scan time: 5.240
The best scores are: opt bits E(85289)
NP_002992 (OMIM: 602413,605373,606764,606864) succ ( 169) 1140 284.5 5.7e-77
NP_001030589 (OMIM: 602413,605373,606764,606864) s ( 135) 748 189.3 2e-48
NP_001030590 (OMIM: 602413,605373,606764,606864) s ( 116) 731 185.2 3.1e-47
NP_001030588 (OMIM: 602413,605373,606764,606864) s ( 150) 559 143.5 1.4e-34
NP_001265101 (OMIM: 602413,605373,606764,606864) s ( 116) 208 58.3 4.7e-09
>>NP_002992 (OMIM: 602413,605373,606764,606864) succinat (169 aa)
initn: 1140 init1: 1140 opt: 1140 Z-score: 1502.9 bits: 284.5 E(85289): 5.7e-77
Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)
10 20 30 40 50 60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
70 80 90 100 110 120
130 140 150 160
pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
130 140 150 160
>>NP_001030589 (OMIM: 602413,605373,606764,606864) succi (135 aa)
initn: 748 init1: 748 opt: 748 Z-score: 990.4 bits: 189.3 E(85289): 2e-48
Smith-Waterman score: 833; 79.9% identity (79.9% similar) in 169 aa overlap (1-169:1-135)
10 20 30 40 50 60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
::::::::::::::::::::::::::
NP_001 MAALLLRHVGRHCLRAHFSPQLCIRN----------------------------------
10 20
70 80 90 100 110 120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
30 40 50 60 70 80
130 140 150 160
pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
90 100 110 120 130
>>NP_001030590 (OMIM: 602413,605373,606764,606864) succi (116 aa)
initn: 731 init1: 731 opt: 731 Z-score: 969.1 bits: 185.2 E(85289): 3.1e-47
Smith-Waterman score: 731; 98.2% identity (99.1% similar) in 112 aa overlap (58-169:5-116)
30 40 50 60 70 80
pF1KE5 VPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGM
. ::::::::::::::::::::::::::::
NP_001 MAALLLSWSLPMAMSICHRGTGIALSAGVSLFGM
10 20 30
90 100 110 120 130 140
pF1KE5 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ
40 50 60 70 80 90
150 160
pF1KE5 LYQSGVVVLVLTVLSSMGLAAM
::::::::::::::::::::::
NP_001 LYQSGVVVLVLTVLSSMGLAAM
100 110
>>NP_001030588 (OMIM: 602413,605373,606764,606864) succi (150 aa)
initn: 559 init1: 559 opt: 559 Z-score: 742.0 bits: 143.5 E(85289): 1.4e-34
Smith-Waterman score: 559; 98.8% identity (98.8% similar) in 82 aa overlap (1-82:1-82)
10 20 30 40 50 60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
:::::::::::::::::::: :
NP_001 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS
70 80 90 100 110 120
>>NP_001265101 (OMIM: 602413,605373,606764,606864) succi (116 aa)
initn: 338 init1: 186 opt: 208 Z-score: 283.5 bits: 58.3 E(85289): 4.7e-09
Smith-Waterman score: 252; 57.3% identity (57.3% similar) in 82 aa overlap (1-82:1-48)
10 20 30 40 50 60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
::::::::::::::::::::::::::
NP_001 MAALLLRHVGRHCLRAHFSPQLCIRN----------------------------------
10 20
70 80 90 100 110 120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
:::::::::::::::::::: :
NP_001 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS
30 40 50 60 70 80
169 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:17:06 2016 done: Mon Nov 7 22:17:07 2016
Total Scan time: 5.240 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]